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Results: 1 to 20 of 57

1.

A viral discovery methodology for clinical biopsy samples utilising massively parallel next generation sequencing.

Daly GM, Bexfield N, Heaney J, Stubbs S, Mayer AP, Palser A, Kellam P, Drou N, Caccamo M, Tiley L, Alexander GJ, Bernal W, Heeney JL.

PLoS One. 2011;6(12):e28879. doi: 10.1371/journal.pone.0028879. Epub 2011 Dec 21.

PMID:
22216131
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Evaluation of high-throughput sequencing for identifying known and unknown viruses in biological samples.

Cheval J, Sauvage V, Frangeul L, Dacheux L, Guigon G, Dumey N, Pariente K, Rousseaux C, Dorange F, Berthet N, Brisse S, Moszer I, Bourhy H, Manuguerra CJ, Lecuit M, Burguiere A, Caro V, Eloit M.

J Clin Microbiol. 2011 Sep;49(9):3268-75. doi: 10.1128/JCM.00850-11. Epub 2011 Jun 29.

PMID:
21715589
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Visitor, an informatic pipeline for analysis of viral siRNA sequencing datasets.

Antoniewski C.

Methods Mol Biol. 2011;721:123-42. doi: 10.1007/978-1-61779-037-9_7.

PMID:
21431682
[PubMed - indexed for MEDLINE]
4.

Massively parallel sequencing: a new tool in virus discovery and vaccine safety.

Onions D.

Bull Mem Acad R Med Belg. 2011;166(10-12):404-6.

PMID:
23082505
[PubMed - indexed for MEDLINE]
5.

Survey of the Applications of NGS to Whole-Genome Sequencing and Expression Profiling.

Lim JS, Choi BS, Lee JS, Shin C, Yang TJ, Rhee JS, Lee JS, Choi IY.

Genomics Inform. 2012 Mar;10(1):1-8. doi: 10.5808/GI.2012.10.1.1. Epub 2012 Mar 31.

PMID:
23105922
[PubMed]
Free PMC Article
6.

Identification of virus encoding microRNAs using 454 FLX sequencing platform.

Kong BW.

Methods Mol Biol. 2011;733:81-91. doi: 10.1007/978-1-61779-089-8_6.

PMID:
21431764
[PubMed - indexed for MEDLINE]
7.

Detection of new viruses by VIDISCA. Virus discovery based on cDNA-amplified fragment length polymorphism.

Pyrc K, Jebbink MF, Berkhout B, van der Hoek L.

Methods Mol Biol. 2008;454:73-89. doi: 10.1007/978-1-59745-181-9_7.

PMID:
19057862
[PubMed - indexed for MEDLINE]
8.

Discovery of DNA viruses in wild-caught mosquitoes using small RNA high throughput sequencing.

Ma M, Huang Y, Gong Z, Zhuang L, Li C, Yang H, Tong Y, Liu W, Cao W.

PLoS One. 2011;6(9):e24758. doi: 10.1371/journal.pone.0024758. Epub 2011 Sep 20.

PMID:
21949749
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Massively parallel sequencing, a new method for detecting adventitious agents.

Onions D, Kolman J.

Biologicals. 2010 May;38(3):377-80. doi: 10.1016/j.biologicals.2010.01.003. Epub 2010 Mar 24.

PMID:
20338780
[PubMed - indexed for MEDLINE]
10.

Defining a sample preparation workflow for advanced virus detection and understanding sensitivity by next-generation sequencing.

Wang CJ, Feng SF, Duncan P.

PDA J Pharm Sci Technol. 2014 Nov-Dec;68(6):579-88. doi: 10.5731/pdajpst.2014.01010.

PMID:
25475632
[PubMed - in process]
11.

De novo assembly of human genomes with massively parallel short read sequencing.

Li R, Zhu H, Ruan J, Qian W, Fang X, Shi Z, Li Y, Li S, Shan G, Kristiansen K, Li S, Yang H, Wang J, Wang J.

Genome Res. 2010 Feb;20(2):265-72. doi: 10.1101/gr.097261.109. Epub 2009 Dec 17.

PMID:
20019144
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Random amplification and pyrosequencing for identification of novel viral genome sequences.

Hang J, Forshey BM, Kochel TJ, Li T, Solórzano VF, Halsey ES, Kuschner RA.

J Biomol Tech. 2012 Apr;23(1):4-10. doi: 10.7171/jbt.12-2301-001.

PMID:
22468136
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: a generic method for diagnosis, discovery and sequencing of viruses.

Kreuze JF, Perez A, Untiveros M, Quispe D, Fuentes S, Barker I, Simon R.

Virology. 2009 May 25;388(1):1-7. doi: 10.1016/j.virol.2009.03.024. Epub 2009 Apr 23.

PMID:
19394993
[PubMed - indexed for MEDLINE]
Free Article
14.

Short reads and nonmodel species: exploring the complexities of next-generation sequence assembly and SNP discovery in the absence of a reference genome.

Everett MV, Grau ED, Seeb JE.

Mol Ecol Resour. 2011 Mar;11 Suppl 1:93-108. doi: 10.1111/j.1755-0998.2010.02969.x.

PMID:
21429166
[PubMed - indexed for MEDLINE]
15.

Metagenomics and future perspectives in virus discovery.

Mokili JL, Rohwer F, Dutilh BE.

Curr Opin Virol. 2012 Feb;2(1):63-77. doi: 10.1016/j.coviro.2011.12.004. Epub 2012 Jan 20. Review.

PMID:
22440968
[PubMed - indexed for MEDLINE]
16.

Identification and characterization of Highlands J virus from a Mississippi sandhill crane using unbiased next-generation sequencing.

Ip HS, Wiley MR, Long R, Palacios G, Shearn-Bochsler V, Whitehouse CA.

J Virol Methods. 2014 Sep;206:42-5. doi: 10.1016/j.jviromet.2014.05.018. Epub 2014 May 29.

PMID:
24880070
[PubMed - in process]
Free Article
17.

Design of microarray probes for virus identification and detection of emerging viruses at the genus level.

Chou CC, Lee TT, Chen CH, Hsiao HY, Lin YL, Ho MS, Yang PC, Peck K.

BMC Bioinformatics. 2006 Apr 28;7:232.

PMID:
16643672
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Sequencing of viral genes.

Holm-Hansen C, Vainio K.

Methods Mol Biol. 2009;551:203-15. doi: 10.1007/978-1-60327-999-4_16.

PMID:
19521877
[PubMed - indexed for MEDLINE]
19.

A pilot study for channel catfish whole genome sequencing and de novo assembly.

Jiang Y, Lu J, Peatman E, Kucuktas H, Liu S, Wang S, Sun F, Liu Z.

BMC Genomics. 2011 Dec 22;12:629. doi: 10.1186/1471-2164-12-629.

PMID:
22192763
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Massively parallel sequencing approaches for characterization of structural variation.

Koboldt DC, Larson DE, Chen K, Ding L, Wilson RK.

Methods Mol Biol. 2012;838:369-84. doi: 10.1007/978-1-61779-507-7_18. Review.

PMID:
22228022
[PubMed - indexed for MEDLINE]
Free PMC Article

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