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Results: 1 to 20 of 77

1.

Identifying elemental genomic track types and representing them uniformly.

Gundersen S, Kalaš M, Abul O, Frigessi A, Hovig E, Sandve GK.

BMC Bioinformatics. 2011 Dec 30;12:494. doi: 10.1186/1471-2105-12-494.

PMID:
22208806
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

gSearch: a fast and flexible general search tool for whole-genome sequencing.

Song T, Hwang KB, Hsing M, Lee K, Bohn J, Kong SW.

Bioinformatics. 2012 Aug 15;28(16):2176-7. doi: 10.1093/bioinformatics/bts358. Epub 2012 Jun 23.

PMID:
22730434
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

SVGenes: a library for rendering genomic features in scalable vector graphic format.

Etherington GJ, MacLean D.

Bioinformatics. 2013 Aug 1;29(15):1890-2. doi: 10.1093/bioinformatics/btt294. Epub 2013 Jun 6.

PMID:
23749959
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

GPAT: retrieval of genomic annotation from large genomic position datasets.

Krebs A, Frontini M, Tora L.

BMC Bioinformatics. 2008 Dec 15;9:533. doi: 10.1186/1471-2105-9-533.

PMID:
19077303
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

AnnTools: a comprehensive and versatile annotation toolkit for genomic variants.

Makarov V, O'Grady T, Cai G, Lihm J, Buxbaum JD, Yoon S.

Bioinformatics. 2012 Mar 1;28(5):724-5. doi: 10.1093/bioinformatics/bts032. Epub 2012 Jan 18.

PMID:
22257670
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Savant: genome browser for high-throughput sequencing data.

Fiume M, Williams V, Brook A, Brudno M.

Bioinformatics. 2010 Aug 15;26(16):1938-44. doi: 10.1093/bioinformatics/btq332. Epub 2010 Jun 20.

PMID:
20562449
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

BEDTools: a flexible suite of utilities for comparing genomic features.

Quinlan AR, Hall IM.

Bioinformatics. 2010 Mar 15;26(6):841-2. doi: 10.1093/bioinformatics/btq033. Epub 2010 Jan 28.

PMID:
20110278
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays.

Menten B, Pattyn F, De Preter K, Robbrecht P, Michels E, Buysse K, Mortier G, De Paepe A, van Vooren S, Vermeesch J, Moreau Y, De Moor B, Vermeulen S, Speleman F, Vandesompele J.

BMC Bioinformatics. 2005 May 23;6:124.

PMID:
15910681
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Characterization of 954 bovine full-CDS cDNA sequences.

Harhay GP, Sonstegard TS, Keele JW, Heaton MP, Clawson ML, Snelling WM, Wiedmann RT, Van Tassell CP, Smith TP.

BMC Genomics. 2005 Nov 23;6:166.

PMID:
16305752
[PubMed - indexed for MEDLINE]
Free PMC Article
10.
11.

BioXSD: the common data-exchange format for everyday bioinformatics web services.

Kalas M, Puntervoll P, Joseph A, Bartaseviciūte E, Töpfer A, Venkataraman P, Pettifer S, Bryne JC, Ison J, Blanchet C, Rapacki K, Jonassen I.

Bioinformatics. 2010 Sep 15;26(18):i540-6. doi: 10.1093/bioinformatics/btq391.

PMID:
20823319
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

GFF-Ex: a genome feature extraction package.

Rastogi A, Gupta D.

BMC Res Notes. 2014 May 24;7:315. doi: 10.1186/1756-0500-7-315.

PMID:
24885931
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

An analysis of extensible modelling for functional genomics data.

Jones AR, Paton NW.

BMC Bioinformatics. 2005 Sep 27;6:235.

PMID:
16188029
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The complete genome of an individual by massively parallel DNA sequencing.

Wheeler DA, Srinivasan M, Egholm M, Shen Y, Chen L, McGuire A, He W, Chen YJ, Makhijani V, Roth GT, Gomes X, Tartaro K, Niazi F, Turcotte CL, Irzyk GP, Lupski JR, Chinault C, Song XZ, Liu Y, Yuan Y, Nazareth L, Qin X, Muzny DM, Margulies M, Weinstock GM, Gibbs RA, Rothberg JM.

Nature. 2008 Apr 17;452(7189):872-6. doi: 10.1038/nature06884.

PMID:
18421352
[PubMed - indexed for MEDLINE]
15.

eXframe: reusable framework for storage, analysis and visualization of genomics experiments.

Sinha AU, Merrill E, Armstrong SA, Clark TW, Das S.

BMC Bioinformatics. 2011 Nov 21;12:452. doi: 10.1186/1471-2105-12-452.

PMID:
22103807
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

DNannotator: Annotation software tool kit for regional genomic sequences.

Liu C, Bonner TI, Nguyen T, Lyons JL, Christian SL, Gershon ES.

Nucleic Acids Res. 2003 Jul 1;31(13):3729-35.

PMID:
12824405
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Processing genome scale tabular data with wormtable.

Kelleher J, Ness RW, Halligan DL.

BMC Bioinformatics. 2013 Dec 5;14:356. doi: 10.1186/1471-2105-14-356.

PMID:
24308302
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

OmniMapFree: a unified tool to visualise and explore sequenced genomes.

Antoniw J, Beacham AM, Baldwin TK, Urban M, Rudd JJ, Hammond-Kosack KE.

BMC Bioinformatics. 2011 Nov 15;12:447. doi: 10.1186/1471-2105-12-447.

PMID:
22085540
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

ACT: aggregation and correlation toolbox for analyses of genome tracks.

Jee J, Rozowsky J, Yip KY, Lochovsky L, Bjornson R, Zhong G, Zhang Z, Fu Y, Wang J, Weng Z, Gerstein M.

Bioinformatics. 2011 Apr 15;27(8):1152-4. doi: 10.1093/bioinformatics/btr092. Epub 2011 Feb 23.

PMID:
21349863
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

SNUGB: a versatile genome browser supporting comparative and functional fungal genomics.

Jung K, Park J, Choi J, Park B, Kim S, Ahn K, Choi J, Choi D, Kang S, Lee YH.

BMC Genomics. 2008 Dec 4;9:586. doi: 10.1186/1471-2164-9-586.

PMID:
19055845
[PubMed - indexed for MEDLINE]
Free PMC Article

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