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Results: 1 to 20 of 101

Similar articles for PubMed (Select 22166047)

1.

RefNetBuilder: a platform for construction of integrated reference gene regulatory networks from expressed sequence tags.

Li Y, Gong P, Perkins EJ, Zhang C, Wang N.

BMC Bioinformatics. 2011 Oct 18;12 Suppl 10:S20. doi: 10.1186/1471-2105-12-S10-S20.

2.

iPathCase(KEGG): An iPad interface for KEGG metabolic pathways.

Johnson SR, Qi X, Cicek AE, Ozsoyoglu G.

Health Inf Sci Syst. 2013 Jan 10;1:4. doi: 10.1186/2047-2501-1-4. eCollection 2013.

3.

An efficient data assimilation schema for restoration and extension of gene regulatory networks using time-course observation data.

Hasegawa T, Mori T, Yamaguchi R, Imoto S, Miyano S, Akutsu T.

J Comput Biol. 2014 Nov;21(11):785-98. doi: 10.1089/cmb.2014.0171. Epub 2014 Sep 22.

PMID:
25244077
4.

MORPHIN: a web tool for human disease research by projecting model organism biology onto a human integrated gene network.

Hwang S, Kim E, Yang S, Marcotte EM, Lee I.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W147-53. doi: 10.1093/nar/gku434. Epub 2014 May 26.

5.

Structural network analysis of biological networks for assessment of potential disease model organisms.

Nabhan AR, Sarkar IN.

J Biomed Inform. 2014 Feb;47:178-91. doi: 10.1016/j.jbi.2013.10.011. Epub 2013 Nov 5.

6.

Jimena: efficient computing and system state identification for genetic regulatory networks.

Karl S, Dandekar T.

BMC Bioinformatics. 2013 Oct 11;14:306. doi: 10.1186/1471-2105-14-306.

7.

LegumeGRN: a gene regulatory network prediction server for functional and comparative studies.

Wang M, Verdier J, Benedito VA, Tang Y, Murray JD, Ge Y, Becker JD, Carvalho H, Rogers C, Udvardi M, He J.

PLoS One. 2013 Jul 3;8(7):e67434. doi: 10.1371/journal.pone.0067434. Print 2013.

8.

A new software package for predictive gene regulatory network modeling and redesign.

Faure E, Peter IS, Davidson EH.

J Comput Biol. 2013 Jun;20(6):419-23. doi: 10.1089/cmb.2012.0297. Epub 2013 Apr 24.

9.

Enchytraeus albidus microarray: enrichment, design, annotation and database (EnchyBASE).

Novais SC, Arrais J, Lopes P, Vandenbrouck T, De Coen W, Roelofs D, Soares AM, Amorim MJ.

PLoS One. 2012;7(4):e34266. doi: 10.1371/journal.pone.0034266. Epub 2012 Apr 27.

10.

Pattern analysis approach reveals restriction enzyme cutting abnormalities and other cDNA library construction artifacts using raw EST data.

Zhou S, Ji G, Liu X, Li P, Moler J, Karro JE, Liang C.

BMC Biotechnol. 2012 May 3;12:16. doi: 10.1186/1472-6750-12-16.

11.

Gene expression profiling of a cold-shocked earthworm Eisenia andrei.

Kim HS, Ahn CH, Park TS, Park HD, Koh KS, Ryoo ZY, Park SC, Lee S.

Cryo Letters. 2012 Jan-Feb;33(1):1-11.

PMID:
22434117
12.

BioNetSim: a Petri net-based modeling tool for simulations of biochemical processes.

Gao J, Li L, Wu X, Wei DQ.

Protein Cell. 2012 Mar;3(3):225-9. doi: 10.1007/s13238-012-2019-4. Epub 2012 Mar 10.

PMID:
22410784
13.

SpiroESTdb: a transcriptome database and online tool for sparganum expressed sequences tags.

Kim DW, Kim DW, Yoo WG, Nam SH, Lee MR, Yang HW, Park J, Lee K, Lee S, Cho SH, Lee WJ, Park HS, Ju JW.

BMC Res Notes. 2012 Mar 8;5:130. doi: 10.1186/1756-0500-5-130.

14.

TranscriptomeBrowser 3.0: introducing a new compendium of molecular interactions and a new visualization tool for the study of gene regulatory networks.

Lepoivre C, Bergon A, Lopez F, Perumal NB, Nguyen C, Imbert J, Puthier D.

BMC Bioinformatics. 2012 Jan 31;13:19. doi: 10.1186/1471-2105-13-19.

15.

GenRev: exploring functional relevance of genes in molecular networks.

Zheng S, Zhao Z.

Genomics. 2012 Mar;99(3):183-8. doi: 10.1016/j.ygeno.2011.12.005. Epub 2011 Dec 29.

16.

"Antelope": a hybrid-logic model checker for branching-time Boolean GRN analysis.

Arellano G, Argil J, Azpeitia E, Benítez M, Carrillo M, Góngora P, Rosenblueth DA, Alvarez-Buylla ER.

BMC Bioinformatics. 2011 Dec 22;12:490. doi: 10.1186/1471-2105-12-490.

17.

BioTapestry: a tool to visualize the dynamic properties of gene regulatory networks.

Longabaugh WJ.

Methods Mol Biol. 2012;786:359-94. doi: 10.1007/978-1-61779-292-2_21.

PMID:
21938637
18.

A high-resolution C. elegans essential gene network based on phenotypic profiling of a complex tissue.

Green RA, Kao HL, Audhya A, Arur S, Mayers JR, Fridolfsson HN, Schulman M, Schloissnig S, Niessen S, Laband K, Wang S, Starr DA, Hyman AA, Schedl T, Desai A, Piano F, Gunsalus KC, Oegema K.

Cell. 2011 Apr 29;145(3):470-82. doi: 10.1016/j.cell.2011.03.037.

19.

Design, validation and annotation of transcriptome-wide oligonucleotide probes for the oligochaete annelid Eisenia fetida.

Gong P, Pirooznia M, Guan X, Perkins EJ.

PLoS One. 2010 Dec 8;5(12):e14266. doi: 10.1371/journal.pone.0014266.

20.

In silico identification of conserved microRNAs and their target transcripts from expressed sequence tags of three earthworm species.

Gong P, Xie F, Zhang B, Perkins EJ.

Comput Biol Chem. 2010 Dec;34(5-6):313-9. doi: 10.1016/j.compbiolchem.2010.09.004. Epub 2010 Oct 7.

PMID:
21030313
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