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Results: 1 to 20 of 95

Similar articles for PubMed (Select 22152302)

1.

Identifying novel transcriptional components controlling energy metabolism.

Gupta RK, Rosen ED, Spiegelman BM.

Cell Metab. 2011 Dec 7;14(6):739-45. doi: 10.1016/j.cmet.2011.11.007. Review.

2.

A probabilistic dynamical model for quantitative inference of the regulatory mechanism of transcription.

Sanguinetti G, Rattray M, Lawrence ND.

Bioinformatics. 2006 Jul 15;22(14):1753-9. Epub 2006 Apr 21.

3.

Serial analysis of binding elements for transcription factors.

Chen J.

Methods Mol Biol. 2009;567:113-32. doi: 10.1007/978-1-60327-414-2_8. Review.

PMID:
19588089
4.

Inferring quantitative models of regulatory networks from expression data.

Nachman I, Regev A, Friedman N.

Bioinformatics. 2004 Aug 4;20 Suppl 1:i248-56.

5.

Biological data warehousing system for identifying transcriptional regulatory sites from gene expressions of microarray data.

Tsou AP, Sun YM, Liu CL, Huang HD, Horng JT, Tsai MF, Liu BJ.

IEEE Trans Inf Technol Biomed. 2006 Jul;10(3):550-8.

PMID:
16871724
6.

A systematic model to predict transcriptional regulatory mechanisms based on overrepresentation of transcription factor binding profiles.

Chang LW, Nagarajan R, Magee JA, Milbrandt J, Stormo GD.

Genome Res. 2006 Mar;16(3):405-13. Epub 2006 Jan 31.

7.

Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks.

Marbach D, Roy S, Ay F, Meyer PE, Candeias R, Kahveci T, Bristow CA, Kellis M.

Genome Res. 2012 Jul;22(7):1334-49. doi: 10.1101/gr.127191.111. Epub 2012 Mar 28.

8.

Identifying pattern-defined regulatory islands in mammalian genomes.

Cheung TH, Barthel KK, Kwan YL, Liu X.

Proc Natl Acad Sci U S A. 2007 Jun 12;104(24):10116-21. Epub 2007 May 29.

9.

Advances in analysis of transcriptional regulatory networks.

Kim TM, Park PJ.

Wiley Interdiscip Rev Syst Biol Med. 2011 Jan-Feb;3(1):21-35. doi: 10.1002/wsbm.105. Review.

PMID:
21069662
10.

The role of chromatin during transcription.

Li B, Carey M, Workman JL.

Cell. 2007 Feb 23;128(4):707-19. Review.

11.

Computational approaches to finding and analyzing cis-regulatory elements.

Brown CT.

Methods Cell Biol. 2008;87:337-65. doi: 10.1016/S0091-679X(08)00218-5. Review.

PMID:
18485306
12.

The post-genomic era: workshop on chromatin immunoprecipitation-related techniques.

Blandino G, Fanciulli M, Levrero M, Piaggio G.

Cell Death Differ. 2007 Jul;14(7):1390-1. Epub 2007 May 18. No abstract available.

13.
14.

Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data.

Liu X, Jessen WJ, Sivaganesan S, Aronow BJ, Medvedovic M.

BMC Bioinformatics. 2007 Aug 3;8:283.

15.

An improved map of conserved regulatory sites for Saccharomyces cerevisiae.

MacIsaac KD, Wang T, Gordon DB, Gifford DK, Stormo GD, Fraenkel E.

BMC Bioinformatics. 2006 Mar 7;7:113.

16.

Predicting genetic regulatory response using classification.

Middendorf M, Kundaje A, Wiggins C, Freund Y, Leslie C.

Bioinformatics. 2004 Aug 4;20 Suppl 1:i232-40.

17.

Computational identification of transcriptional regulatory elements in DNA sequence.

GuhaThakurta D.

Nucleic Acids Res. 2006 Jul 19;34(12):3585-98. Print 2006. Review.

19.
20.

In silico discovery of transcription regulatory elements in Plasmodium falciparum.

Young JA, Johnson JR, Benner C, Yan SF, Chen K, Le Roch KG, Zhou Y, Winzeler EA.

BMC Genomics. 2008 Feb 7;9:70. doi: 10.1186/1471-2164-9-70.

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