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Items: 1 to 20 of 169


A population genetics-phylogenetics approach to inferring natural selection in coding sequences.

Wilson DJ, Hernandez RD, Andolfatto P, Przeworski M.

PLoS Genet. 2011 Dec;7(12):e1002395. doi: 10.1371/journal.pgen.1002395. Epub 2011 Dec 1.


The evolution of small insertions and deletions in the coding genes of Drosophila melanogaster.

Chong Z, Zhai W, Li C, Gao M, Gong Q, Ruan J, Li J, Jiang L, Lv X, Hungate E, Wu CI.

Mol Biol Evol. 2013 Dec;30(12):2699-708. doi: 10.1093/molbev/mst167. Epub 2013 Sep 26.


Effective population size and the efficacy of selection on the X chromosomes of two closely related Drosophila species.

Andolfatto P, Wong KM, Bachtrog D.

Genome Biol Evol. 2011;3:114-28. doi: 10.1093/gbe/evq086. Epub 2010 Dec 20.


The population genetics of the origin and divergence of the Drosophila simulans complex species.

Kliman RM, Andolfatto P, Coyne JA, Depaulis F, Kreitman M, Berry AJ, McCarter J, Wakeley J, Hey J.

Genetics. 2000 Dec;156(4):1913-31.


Molecular evolution in the Drosophila melanogaster species subgroup: frequent parameter fluctuations on the timescale of molecular divergence.

Akashi H, Ko WY, Piao S, John A, Goel P, Lin CF, Vitins AP.

Genetics. 2006 Mar;172(3):1711-26. Epub 2005 Dec 30.


Bayesian analysis suggests that most amino acid replacements in Drosophila are driven by positive selection.

Sawyer SA, Kulathinal RJ, Bustamante CD, Hartl DL.

J Mol Evol. 2003;57 Suppl 1:S154-64.


Molecular evolution under increasing transposable element burden in Drosophila: a speed limit on the evolutionary arms race.

Castillo DM, Mell JC, Box KS, Blumenstiel JP.

BMC Evol Biol. 2011 Sep 14;11:258. doi: 10.1186/1471-2148-11-258.


An approximate bayesian estimator suggests strong, recurrent selective sweeps in Drosophila.

Jensen JD, Thornton KR, Andolfatto P.

PLoS Genet. 2008 Sep 19;4(9):e1000198. doi: 10.1371/journal.pgen.1000198.


Intron length evolution in Drosophila.

Presgraves DC.

Mol Biol Evol. 2006 Nov;23(11):2203-13. Epub 2006 Aug 21.


Hitchhiking effects of recurrent beneficial amino acid substitutions in the Drosophila melanogaster genome.

Andolfatto P.

Genome Res. 2007 Dec;17(12):1755-62. Epub 2007 Nov 7. Erratum in: Genome Res. 2008 Jan;18(1):197.


Statistical inference of selection and divergence from a time-dependent Poisson random field model.

Amei A, Sawyer S.

PLoS One. 2012;7(4):e34413. doi: 10.1371/journal.pone.0034413. Epub 2012 Apr 3.

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