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Results: 1 to 20 of 104

1.

Reduced mRNA secondary-structure stability near the start codon indicates functional genes in prokaryotes.

Keller TE, Mis SD, Jia KE, Wilke CO.

Genome Biol Evol. 2012;4(2):80-8. doi: 10.1093/gbe/evr129. Epub 2011 Dec 2.

PMID:
22138151
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Codon bias at the 3'-side of the initiation codon is correlated with translation initiation efficiency in Escherichia coli.

Stenström CM, Jin H, Major LL, Tate WP, Isaksson LA.

Gene. 2001 Jan 24;263(1-2):273-84.

PMID:
11223267
[PubMed - indexed for MEDLINE]
3.

Reduced stability of mRNA secondary structure near the translation-initiation site in dsDNA viruses.

Zhou T, Wilke CO.

BMC Evol Biol. 2011 Mar 7;11:59. doi: 10.1186/1471-2148-11-59.

PMID:
21385374
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Regulation of translation via mRNA structure in prokaryotes and eukaryotes.

Kozak M.

Gene. 2005 Nov 21;361:13-37. Epub 2005 Oct 5. Review.

PMID:
16213112
[PubMed - indexed for MEDLINE]
5.

Anatomy of Escherichia coli ribosome binding sites.

Shultzaberger RK, Bucheimer RE, Rudd KE, Schneider TD.

J Mol Biol. 2001 Oct 12;313(1):215-28.

PMID:
11601857
[PubMed - indexed for MEDLINE]
6.

Codon and base biases after the initiation codon of the open reading frames in the Escherichia coli genome and their influence on the translation efficiency.

Sato T, Terabe M, Watanabe H, Gojobori T, Hori-Takemoto C, Miura Ki.

J Biochem. 2001 Jun;129(6):851-60.

PMID:
11388898
[PubMed - indexed for MEDLINE]
Free Article
7.

A universal trend of reduced mRNA stability near the translation-initiation site in prokaryotes and eukaryotes.

Gu W, Zhou T, Wilke CO.

PLoS Comput Biol. 2010 Feb 5;6(2):e1000664. doi: 10.1371/journal.pcbi.1000664.

PMID:
20140241
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Predicting Shine-Dalgarno sequence locations exposes genome annotation errors.

Starmer J, Stomp A, Vouk M, Bitzer D.

PLoS Comput Biol. 2006 May;2(5):e57. Epub 2006 May 19.

PMID:
16710451
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Complementarity of the 16S rRNA penultimate stem with sequences downstream of the AUG destabilizes the plastid mRNAs.

Kuroda H, Maliga P.

Nucleic Acids Res. 2001 Feb 15;29(4):970-5.

PMID:
11160930
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Widespread selection for local RNA secondary structure in coding regions of bacterial genes.

Katz L, Burge CB.

Genome Res. 2003 Sep;13(9):2042-51.

PMID:
12952875
[PubMed - indexed for MEDLINE]
Free PMC Article
11.
12.

The translation start codon region is sensitive to antisense PNA inhibition in Escherichia coli.

Dryselius R, Aswasti SK, Rajarao GK, Nielsen PE, Good L.

Oligonucleotides. 2003;13(6):427-33.

PMID:
15025910
[PubMed - indexed for MEDLINE]
13.

Efficient translation initiation dictates codon usage at gene start.

Bentele K, Saffert P, Rauscher R, Ignatova Z, Blüthgen N.

Mol Syst Biol. 2013 Jun 18;9:675. doi: 10.1038/msb.2013.32.

PMID:
23774758
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.

Besemer J, Lomsadze A, Borodovsky M.

Nucleic Acids Res. 2001 Jun 15;29(12):2607-18.

PMID:
11410670
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Quantitative correlation between mRNA secondary structure around the region downstream of the initiation codon and translational efficiency in Escherichia coli.

Seo SW, Yang J, Jung GY.

Biotechnol Bioeng. 2009 Oct 15;104(3):611-6. doi: 10.1002/bit.22431.

PMID:
19579224
[PubMed - indexed for MEDLINE]
16.

The role of the AUU initiation codon in the negative feedback regulation of the gene for translation initiation factor IF3 in Escherichia coli.

Sacerdot C, Chiaruttini C, Engst K, Graffe M, Milet M, Mathy N, Dondon J, Springer M.

Mol Microbiol. 1996 Jul;21(2):331-46.

PMID:
8858588
[PubMed - indexed for MEDLINE]
17.

Analyzing and enhancing mRNA translational efficiency in an Escherichia coli in vitro expression system.

Voges D, Watzele M, Nemetz C, Wizemann S, Buchberger B.

Biochem Biophys Res Commun. 2004 May 28;318(2):601-14.

PMID:
15120642
[PubMed - indexed for MEDLINE]
18.

Translation of the flagellar gene fliO of Salmonella typhimurium from putative tandem starts.

Schoenhals GJ, Kihara M, Macnab RM.

J Bacteriol. 1998 Jun;180(11):2936-42.

PMID:
9603885
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Influences on gene expression in vivo by a Shine-Dalgarno sequence.

Jin H, Zhao Q, Gonzalez de Valdivia EI, Ardell DH, Stenström M, Isaksson LA.

Mol Microbiol. 2006 Apr;60(2):480-92.

PMID:
16573696
[PubMed - indexed for MEDLINE]
20.

A periodic pattern of mRNA secondary structure created by the genetic code.

Shabalina SA, Ogurtsov AY, Spiridonov NA.

Nucleic Acids Res. 2006 May 8;34(8):2428-37. Print 2006.

PMID:
16682450
[PubMed - indexed for MEDLINE]
Free PMC Article
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