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Results: 1 to 20 of 113

1.

A pre-initiation complex at the 3'-end of genes drives antisense transcription independent of divergent sense transcription.

Murray SC, Serra Barros A, Brown DA, Dudek P, Ayling J, Mellor J.

Nucleic Acids Res. 2012 Mar;40(6):2432-44. doi: 10.1093/nar/gkr1121. Epub 2011 Nov 28.

PMID:
22123739
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Mechanisms of antisense transcription initiation from the 3' end of the GAL10 coding sequence in vivo.

Malik S, Durairaj G, Bhaumik SR.

Mol Cell Biol. 2013 Sep;33(18):3549-67. doi: 10.1128/MCB.01715-12. Epub 2013 Jul 8.

PMID:
23836882
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome.

Venters BJ, Pugh BF.

Genome Res. 2009 Mar;19(3):360-71. doi: 10.1101/gr.084970.108. Epub 2009 Jan 5.

PMID:
19124666
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Regulated antisense transcription controls expression of cell-type-specific genes in yeast.

Gelfand B, Mead J, Bruning A, Apostolopoulos N, Tadigotla V, Nagaraj V, Sengupta AM, Vershon AK.

Mol Cell Biol. 2011 Apr;31(8):1701-9. doi: 10.1128/MCB.01071-10. Epub 2011 Feb 7.

PMID:
21300780
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Architecture of the yeast RNA polymerase II open complex and regulation of activity by TFIIF.

Fishburn J, Hahn S.

Mol Cell Biol. 2012 Jan;32(1):12-25. doi: 10.1128/MCB.06242-11. Epub 2011 Oct 24.

PMID:
22025674
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Tye7 regulates yeast Ty1 retrotransposon sense and antisense transcription in response to adenylic nucleotides stress.

Servant G, Pinson B, Tchalikian-Cosson A, Coulpier F, Lemoine S, Pennetier C, Bridier-Nahmias A, Todeschini AL, Fayol H, Daignan-Fornier B, Lesage P.

Nucleic Acids Res. 2012 Jul;40(12):5271-82. doi: 10.1093/nar/gks166. Epub 2012 Feb 29.

PMID:
22379133
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Antisense expression increases gene expression variability and locus interdependency.

Xu Z, Wei W, Gagneur J, Clauder-Münster S, Smolik M, Huber W, Steinmetz LM.

Mol Syst Biol. 2011 Feb 15;7:468. doi: 10.1038/msb.2011.1.

PMID:
21326235
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

A physiological role for gene loops in yeast.

Lainé JP, Singh BN, Krishnamurthy S, Hampsey M.

Genes Dev. 2009 Nov 15;23(22):2604-9. doi: 10.1101/gad.1823609.

PMID:
19933150
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Gene looping is conferred by activator-dependent interaction of transcription initiation and termination machineries.

El Kaderi B, Medler S, Raghunayakula S, Ansari A.

J Biol Chem. 2009 Sep 11;284(37):25015-25. doi: 10.1074/jbc.M109.007948. Epub 2009 Jul 14.

PMID:
19602510
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Bimodal expression of PHO84 is modulated by early termination of antisense transcription.

Castelnuovo M, Rahman S, Guffanti E, Infantino V, Stutz F, Zenklusen D.

Nat Struct Mol Biol. 2013 Jul;20(7):851-8. doi: 10.1038/nsmb.2598. Epub 2013 Jun 16.

PMID:
23770821
[PubMed - indexed for MEDLINE]
11.

The FACT complex travels with elongating RNA polymerase II and is important for the fidelity of transcriptional initiation in vivo.

Mason PB, Struhl K.

Mol Cell Biol. 2003 Nov;23(22):8323-33. Erratum in: Mol Cell Biol. 2004 Jul;24(14):6536.

PMID:
14585989
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The mRNA cap-binding complex stimulates the formation of pre-initiation complex at the promoter via its interaction with Mot1p in vivo.

Lahudkar S, Shukla A, Bajwa P, Durairaj G, Stanojevic N, Bhaumik SR.

Nucleic Acids Res. 2011 Mar;39(6):2188-209. doi: 10.1093/nar/gkq1029. Epub 2010 Nov 12.

PMID:
21075799
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

A transcription-independent role for TFIIB in gene looping.

Singh BN, Hampsey M.

Mol Cell. 2007 Sep 7;27(5):806-16.

PMID:
17803944
[PubMed - indexed for MEDLINE]
Free Article
14.

Transcription elongation factors repress transcription initiation from cryptic sites.

Kaplan CD, Laprade L, Winston F.

Science. 2003 Aug 22;301(5636):1096-9.

PMID:
12934008
[PubMed - indexed for MEDLINE]
Free Article
15.

Mot1-mediated control of transcription complex assembly and activity.

Dasgupta A, Juedes SA, Sprouse RO, Auble DT.

EMBO J. 2005 May 4;24(9):1717-29. Epub 2005 Apr 7.

PMID:
15861138
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Activation of a poised RNAPII-dependent promoter requires both SAGA and mediator.

Lee SK, Fletcher AG, Zhang L, Chen X, Fischbeck JA, Stargell LA.

Genetics. 2010 Mar;184(3):659-72. doi: 10.1534/genetics.109.113464. Epub 2010 Jan 4.

PMID:
20048049
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Antisense transcription is coupled to nucleosome occupancy in sense promoters.

Dai Z, Dai X.

Bioinformatics. 2012 Nov 1;28(21):2719-23. doi: 10.1093/bioinformatics/bts534. Epub 2012 Aug 31.

PMID:
22942018
[PubMed - indexed for MEDLINE]
Free Article
18.

Mechanism of start site selection by RNA polymerase II: interplay between TFIIB and Ssl2/XPB helicase subunit of TFIIH.

Goel S, Krishnamurthy S, Hampsey M.

J Biol Chem. 2012 Jan 2;287(1):557-67. doi: 10.1074/jbc.M111.281576. Epub 2011 Nov 11.

PMID:
22081613
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Simultaneous recruitment of coactivators by Gcn4p stimulates multiple steps of transcription in vivo.

Govind CK, Yoon S, Qiu H, Govind S, Hinnebusch AG.

Mol Cell Biol. 2005 Jul;25(13):5626-38.

PMID:
15964818
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

High-resolution protein-DNA contacts for the yeast RNA polymerase II general transcription machinery.

Chen BS, Mandal SS, Hampsey M.

Biochemistry. 2004 Oct 12;43(40):12741-9.

PMID:
15461446
[PubMed - indexed for MEDLINE]

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