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Items: 1 to 20 of 90


Quantitative model of R-loop forming structures reveals a novel level of RNA-DNA interactome complexity.

Wongsurawat T, Jenjaroenpun P, Kwoh CK, Kuznetsov V.

Nucleic Acids Res. 2012 Jan;40(2):e16. doi: 10.1093/nar/gkr1075. Epub 2011 Nov 25.


QmRLFS-finder: a model, web server and stand-alone tool for prediction and analysis of R-loop forming sequences.

Jenjaroenpun P, Wongsurawat T, Yenamandra SP, Kuznetsov VA.

Nucleic Acids Res. 2015 Jul 1;43(W1):W527-34. doi: 10.1093/nar/gkv344. Epub 2015 Apr 16. Erratum in: Nucleic Acids Res. 2015 Nov 16;43(20):10081.


R-loop structure: the formation and the effects on genomic stability.

Pan X, Jiang N, Chen X, Zhou X, Ding L, Duan F.

Yi Chuan. 2014 Dec;36(12):1185-94. doi: 10.3724/SP.J.1005.2014.1185. Review.


R loops: from transcription byproducts to threats to genome stability.

Aguilera A, GarcĂ­a-Muse T.

Mol Cell. 2012 Apr 27;46(2):115-24. doi: 10.1016/j.molcel.2012.04.009. Review.


Competition between the RNA transcript and the nontemplate DNA strand during R-loop formation in vitro: a nick can serve as a strong R-loop initiation site.

Roy D, Zhang Z, Lu Z, Hsieh CL, Lieber MR.

Mol Cell Biol. 2010 Jan;30(1):146-59. doi: 10.1128/MCB.00897-09. Epub .


Detection and structural analysis of R-loops.

Yu K, Roy D, Huang FT, Lieber MR.

Methods Enzymol. 2006;409:316-29.


R-loops at immunoglobulin class switch regions in the chromosomes of stimulated B cells.

Yu K, Chedin F, Hsieh CL, Wilson TE, Lieber MR.

Nat Immunol. 2003 May;4(5):442-51.


The TTSMI database: a catalog of triplex target DNA sites associated with genes and regulatory elements in the human genome.

Jenjaroenpun P, Chew CS, Yong TP, Choowongkomon K, Thammasorn W, Kuznetsov VA.

Nucleic Acids Res. 2015 Jan;43(Database issue):D110-6. doi: 10.1093/nar/gku970. Epub 2014 Oct 16.


Out of balance: R-loops in human disease.

Groh M, Gromak N.

PLoS Genet. 2014 Sep 18;10(9):e1004630. doi: 10.1371/journal.pgen.1004630. eCollection 2014 Sep. Review.


SpliceDisease database: linking RNA splicing and disease.

Wang J, Zhang J, Li K, Zhao W, Cui Q.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1055-9. doi: 10.1093/nar/gkr1171. Epub 2011 Dec 1.


Human senataxin resolves RNA/DNA hybrids formed at transcriptional pause sites to promote Xrn2-dependent termination.

Skourti-Stathaki K, Proudfoot NJ, Gromak N.

Mol Cell. 2011 Jun 24;42(6):794-805. doi: 10.1016/j.molcel.2011.04.026.


Regulatory mechanisms of gene expression: complexity with elements of deterministic chaos.

Jura J, Wegrzyn P, Jura J, Koj A.

Acta Biochim Pol. 2006;53(1):1-10. Epub 2006 Feb 23. Review.


Projection of gene-protein networks to the functional space of the proteome and its application to analysis of organism complexity.

Kanapin AA, Mulder N, Kuznetsov VA.

BMC Genomics. 2010 Feb 10;11 Suppl 1:S4. doi: 10.1186/1471-2164-11-S1-S4.


Complementarity-directed RNA dimer-linkage promotes retroviral recombination in vivo.

Mikkelsen JG, Rasmussen SV, Pedersen FS.

Nucleic Acids Res. 2004 Jan 9;32(1):102-14. Print 2004.


Triplet repeat DNA structures and human genetic disease: dynamic mutations from dynamic DNA.

Sinden RR, Potaman VN, Oussatcheva EA, Pearson CE, Lyubchenko YL, Shlyakhtenko LS.

J Biosci. 2002 Feb;27(1 Suppl 1):53-65.


Intracellular transcription of G-rich DNAs induces formation of G-loops, novel structures containing G4 DNA.

Duquette ML, Handa P, Vincent JA, Taylor AF, Maizels N.

Genes Dev. 2004 Jul 1;18(13):1618-29.

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