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Items: 1 to 20 of 73

1.

The post-apoptotic fate of RNAs identified through high-throughput sequencing of human hair.

Lefkowitz GK, Mukhopadhyay A, Cowing-Zitron C, Yu BD.

PLoS One. 2011;6(11):e27603. doi: 10.1371/journal.pone.0027603. Epub 2011 Nov 16.

2.

Generation of plant small RNA cDNA libraries for high-throughput sequencing.

Zhu QH, Helliwell CA.

Methods Mol Biol. 2012;894:123-37. doi: 10.1007/978-1-61779-882-5_9.

PMID:
22678577
3.

Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq.

Shepard PJ, Choi EA, Lu J, Flanagan LA, Hertel KJ, Shi Y.

RNA. 2011 Apr;17(4):761-72. doi: 10.1261/rna.2581711. Epub 2011 Feb 22.

4.

Identification of Taxus microRNAs and their targets with high-throughput sequencing and degradome analysis.

Hao DC, Yang L, Xiao PG, Liu M.

Physiol Plant. 2012 Dec;146(4):388-403. doi: 10.1111/j.1399-3054.2012.01668.x. Epub 2012 Jul 25.

PMID:
22708792
5.

Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories.

't Hoen PA, Friedländer MR, Almlöf J, Sammeth M, Pulyakhina I, Anvar SY, Laros JF, Buermans HP, Karlberg O, Brännvall M; GEUVADIS Consortium, den Dunnen JT, van Ommen GJ, Gut IG, Guigó R, Estivill X, Syvänen AC, Dermitzakis ET, Lappalainen T.

Nat Biotechnol. 2013 Nov;31(11):1015-22. doi: 10.1038/nbt.2702. Epub 2013 Sep 15.

PMID:
24037425
6.

Deep-sequencing protocols influence the results obtained in small-RNA sequencing.

Toedling J, Servant N, Ciaudo C, Farinelli L, Voinnet O, Heard E, Barillot E.

PLoS One. 2012;7(2):e32724. doi: 10.1371/journal.pone.0032724. Epub 2012 Feb 27.

7.

Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries.

de Hoon MJ, Taft RJ, Hashimoto T, Kanamori-Katayama M, Kawaji H, Kawano M, Kishima M, Lassmann T, Faulkner GJ, Mattick JS, Daub CO, Carninci P, Kawai J, Suzuki H, Hayashizaki Y.

Genome Res. 2010 Feb;20(2):257-64. doi: 10.1101/gr.095273.109. Epub 2010 Jan 5.

8.

Barcoded cDNA library preparation for small RNA profiling by next-generation sequencing.

Hafner M, Renwick N, Farazi TA, Mihailović A, Pena JT, Tuschl T.

Methods. 2012 Oct;58(2):164-70. doi: 10.1016/j.ymeth.2012.07.030. Epub 2012 Aug 7.

9.

Identification and characterization of microRNAs in Phaseolus vulgaris by high-throughput sequencing.

Peláez P, Trejo MS, Iñiguez LP, Estrada-Navarrete G, Covarrubias AA, Reyes JL, Sanchez F.

BMC Genomics. 2012 Mar 6;13:83. doi: 10.1186/1471-2164-13-83.

10.

Library preparation methods for next-generation sequencing: tone down the bias.

van Dijk EL, Jaszczyszyn Y, Thermes C.

Exp Cell Res. 2014 Mar 10;322(1):12-20. doi: 10.1016/j.yexcr.2014.01.008. Epub 2014 Jan 15. Review.

PMID:
24440557
11.

Identification and characterization of microRNAs from peanut (Arachis hypogaea L.) by high-throughput sequencing.

Chi X, Yang Q, Chen X, Wang J, Pan L, Chen M, Yang Z, He Y, Liang X, Yu S.

PLoS One. 2011;6(11):e27530. doi: 10.1371/journal.pone.0027530. Epub 2011 Nov 16.

12.

[Application of next generation sequencing in microRNA detection].

Tang HM, Chen H, Zhang J, Ren JY, Xu N.

Yi Chuan. 2012 Jun;34(6):784-92. Review. Chinese.

PMID:
22698751
13.

Detection of small RNAs and microRNAs using deep sequencing technology.

Havecker ER.

Methods Mol Biol. 2011;732:55-68. doi: 10.1007/978-1-61779-083-6_5.

PMID:
21431705
14.

Identification of novel and known miRNAs in deep-sequencing data with miRDeep2.

Mackowiak SD.

Curr Protoc Bioinformatics. 2011 Dec;Chapter 12:Unit 12.10.. doi: 10.1002/0471250953.bi1210s36.

PMID:
22161567
15.

Discovery of microRNA regulatory networks by integrating multidimensional high-throughput data.

Yang JH, Qu LH.

Adv Exp Med Biol. 2013;774:251-66. doi: 10.1007/978-94-007-5590-1_13.

PMID:
23377977
16.

Investigation of the microRNAs in safflower seed, leaf, and petal by high-throughput sequencing.

Li H, Dong Y, Sun Y, Zhu E, Yang J, Liu X, Xue P, Xiao Y, Yang S, Wu J, Li X.

Planta. 2011 Mar;233(3):611-9. doi: 10.1007/s00425-010-1327-2. Epub 2010 Dec 7.

PMID:
21136073
17.

Construction of small RNA cDNA libraries for high-throughput sequencing.

Lu C, Shedge V.

Methods Mol Biol. 2011;729:141-52. doi: 10.1007/978-1-61779-065-2_9.

PMID:
21365488
18.

Functional microRNA screening using a comprehensive lentiviral human microRNA expression library.

Poell JB, van Haastert RJ, Cerisoli F, Bolijn AS, Timmer LM, Diosdado-Calvo B, Meijer GA, van Puijenbroek AA, Berezikov E, Schaapveld RQ, Cuppen E.

BMC Genomics. 2011 Nov 3;12:546. doi: 10.1186/1471-2164-12-546.

19.

Detection and quantification of alternative splicing variants using RNA-seq.

Bryant DW Jr, Priest HD, Mockler TC.

Methods Mol Biol. 2012;883:97-110. doi: 10.1007/978-1-61779-839-9_7.

PMID:
22589127
20.

Next-generation sequencing of miRNAs with Roche 454 GS-FLX technology: steps for a successful application.

Soares AR, Pereira PM, Santos MA.

Methods Mol Biol. 2012;822:189-204. doi: 10.1007/978-1-61779-427-8_13.

PMID:
22144200
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