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dbDEPC 2.0: updated database of differentially expressed proteins in human cancers.

He Y, Zhang M, Ju Y, Yu Z, Lv D, Sun H, Yuan W, He F, Zhang J, Li H, Li J, Wang-Sattler R, Li Y, Zhang G, Xie L.

Nucleic Acids Res. 2012 Jan;40(Database issue):D964-71. doi: 10.1093/nar/gkr936. Epub 2011 Nov 16.


dbDEPC: a database of differentially expressed proteins in human cancers.

Li H, He Y, Ding G, Wang C, Xie L, Li Y.

Nucleic Acids Res. 2010 Jan;38(Database issue):D658-64. doi: 10.1093/nar/gkp933. Epub 2009 Nov 9.


A web-based tool for in silico biomarker discovery based on tissue-specific protein profiles in normal and cancer tissues.

Björling E, Lindskog C, Oksvold P, Linné J, Kampf C, Hober S, Uhlén M, Pontén F.

Mol Cell Proteomics. 2008 May;7(5):825-44. Epub 2007 Oct 3.


DEPD: a novel database for differentially expressed proteins.

He QY, Cao J, Liu XH, Li MX, Liu YS, Xie JY, Liang SP.

Bioinformatics. 2005 Sep 15;21(18):3694-6. Epub 2005 Jul 14.


A tool for biomarker discovery in the urinary proteome: a manually curated human and animal urine protein biomarker database.

Shao C, Li M, Li X, Wei L, Zhu L, Yang F, Jia L, Mu Y, Wang J, Guo Z, Zhang D, Yin J, Wang Z, Sun W, Zhang Z, Gao Y.

Mol Cell Proteomics. 2011 Nov;10(11):M111.010975. doi: 10.1074/mcp.M111.010975. Epub 2011 Aug 29.


Human Protein Reference Database--2009 update.

Keshava Prasad TS, Goel R, Kandasamy K, Keerthikumar S, Kumar S, Mathivanan S, Telikicherla D, Raju R, Shafreen B, Venugopal A, Balakrishnan L, Marimuthu A, Banerjee S, Somanathan DS, Sebastian A, Rani S, Ray S, Harrys Kishore CJ, Kanth S, Ahmed M, Kashyap MK, Mohmood R, Ramachandra YL, Krishna V, Rahiman BA, Mohan S, Ranganathan P, Ramabadran S, Chaerkady R, Pandey A.

Nucleic Acids Res. 2009 Jan;37(Database issue):D767-72. doi: 10.1093/nar/gkn892. Epub 2008 Nov 6.


A database application for pre-processing, storage and comparison of mass spectra derived from patients and controls.

Titulaer MK, Siccama I, Dekker LJ, van Rijswijk AL, Heeren RM, Sillevis Smitt PA, Luider TM.

BMC Bioinformatics. 2006 Sep 5;7:403.


The Biomolecular Crystallization Database Version 4: expanded content and new features.

Tung M, Gallagher DT.

Acta Crystallogr D Biol Crystallogr. 2009 Jan;65(Pt 1):18-23. doi: 10.1107/S0907444908035440. Epub 2008 Dec 18.


The Human Protein Atlas as a proteomic resource for biomarker discovery.

Pontén F, Schwenk JM, Asplund A, Edqvist PH.

J Intern Med. 2011 Nov;270(5):428-46. doi: 10.1111/j.1365-2796.2011.02427.x. Epub 2011 Aug 3. Review.


Comparative proteomic study for profiling differentially expressed proteins between Chinese left- and right-sided colon cancers.

Shen H, Huang J, Pei H, Zeng S, Tao Y, Shen L, Zeng L, Zhu H.

Cancer Sci. 2013 Jan;104(1):135-41. doi: 10.1111/cas.12029. Epub 2012 Nov 17.


A database of unique protein sequence identifiers for proteome studies.

Babnigg G, Giometti CS.

Proteomics. 2006 Aug;6(16):4514-22.


Analysis of high accuracy, quantitative proteomics data in the MaxQB database.

Schaab C, Geiger T, Stoehr G, Cox J, Mann M.

Mol Cell Proteomics. 2012 Mar;11(3):M111.014068. doi: 10.1074/mcp.M111.014068. Epub 2012 Feb 2.


LeishCyc: a biochemical pathways database for Leishmania major.

Doyle MA, MacRae JI, De Souza DP, Saunders EC, McConville MJ, Likić VA.

BMC Syst Biol. 2009 Jun 5;3:57. doi: 10.1186/1752-0509-3-57.


A new bioinformatics insight into human cancer-associated proteins.

Liu FJ, Hua XF, Wang WJ.

Oncol Rep. 2012 Jun;27(6):1932-6. doi: 10.3892/or.2012.1714. Epub 2012 Mar 12.


Human Proteinpedia: a unified discovery resource for proteomics research.

Kandasamy K, Keerthikumar S, Goel R, Mathivanan S, Patankar N, Shafreen B, Renuse S, Pawar H, Ramachandra YL, Acharya PK, Ranganathan P, Chaerkady R, Keshava Prasad TS, Pandey A.

Nucleic Acids Res. 2009 Jan;37(Database issue):D773-81. doi: 10.1093/nar/gkn701. Epub 2008 Oct 23.


DDEC: Dragon database of genes implicated in esophageal cancer.

Essack M, Radovanovic A, Schaefer U, Schmeier S, Seshadri SV, Christoffels A, Kaur M, Bajic VB.

BMC Cancer. 2009 Jul 6;9:219. doi: 10.1186/1471-2407-9-219.


Proteomics for identifying mechanisms and biomarkers of drug resistance in cancer.

Li XH, Li C, Xiao ZQ.

J Proteomics. 2011 Nov 18;74(12):2642-9. doi: 10.1016/j.jprot.2011.09.004. Epub 2011 Sep 20. Review.


PLIPS, an automatically collected database of protein lists reported by proteomics studies.

Antonov AV, Dietmann S, Wong P, Igor R, Mewes HW.

J Proteome Res. 2009 Mar;8(3):1193-7. doi: 10.1021/pr800804d.


Strategies for plasma proteomic profiling of cancers.

Omenn GS.

Proteomics. 2006 Oct;6(20):5662-73. Review.


Human Proteinpedia as a resource for clinical proteomics.

Mathivanan S, Pandey A.

Mol Cell Proteomics. 2008 Oct;7(10):2038-47. doi: 10.1074/mcp.R800008-MCP200. Epub 2008 Jun 23. Review.

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