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Similar articles for PubMed (Select 22084688)

1.

PolyAlign: A Versatile LC-MS Data Alignment Tool for Landmark-Selected and -Automated Use.

Vähämaa H, Koskinen VR, Hosia W, Moulder R, Nevalainen OS, Lahesmaa R, Aittokallio T, Salmi J.

Int J Proteomics. 2011;2011:450290. doi: 10.1155/2011/450290. Epub 2011 Apr 19.

2.

Processing methods for differential analysis of LC/MS profile data.

Katajamaa M, Oresic M.

BMC Bioinformatics. 2005 Jul 18;6:179.

3.

IDEAL-Q, an automated tool for label-free quantitation analysis using an efficient peptide alignment approach and spectral data validation.

Tsou CC, Tsai CF, Tsui YH, Sudhir PR, Wang YT, Chen YJ, Chen JY, Sung TY, Hsu WL.

Mol Cell Proteomics. 2010 Jan;9(1):131-44. doi: 10.1074/mcp.M900177-MCP200. Epub 2009 Sep 13.

4.

A geometric approach for the alignment of liquid chromatography-mass spectrometry data.

Lange E, Gröpl C, Schulz-Trieglaff O, Leinenbach A, Huber C, Reinert K.

Bioinformatics. 2007 Jul 1;23(13):i273-81.

5.

ProMSED: protein multiple sequence editor for Windows 3.11/95.

Frolov AS, Pika IS, Eroshkin AM.

Comput Appl Biosci. 1997 Jun;13(3):243-8.

PMID:
9183528
6.

SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling.

Mueller LN, Rinner O, Schmidt A, Letarte S, Bodenmiller B, Brusniak MY, Vitek O, Aebersold R, Müller M.

Proteomics. 2007 Oct;7(19):3470-80.

PMID:
17726677
7.

[Principles and methods of geometric morphometrics].

Pavlinov IIa, Mikeshina NG.

Zh Obshch Biol. 2002 Nov-Dec;63(6):473-93. Review. Russian.

PMID:
12510587
8.

Whole-body PET/CT imaging: combining software- and hardware-based co-registration.

Weigert M, Pietrzyk U, Müller S, Palm C, Beyer T.

Z Med Phys. 2008;18(1):59-66.

PMID:
18524389
9.

Look-Align: an interactive web-based multiple sequence alignment viewer with polymorphism analysis support.

Canaran P, Stein L, Ware D.

Bioinformatics. 2006 Apr 1;22(7):885-6. Epub 2006 Feb 10.

10.

A high-throughput processing service for retention time alignment of complex proteomics and metabolomics LC-MS data.

Ahmad I, Suits F, Hoekman B, Swertz MA, Byelas H, Dijkstra M, Hooft R, Katsubo D, van Breukelen B, Bischoff R, Horvatovich P.

Bioinformatics. 2011 Apr 15;27(8):1176-8. doi: 10.1093/bioinformatics/btr094. Epub 2011 Feb 23.

11.

MZmine 2: modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data.

Pluskal T, Castillo S, Villar-Briones A, Oresic M.

BMC Bioinformatics. 2010 Jul 23;11:395. doi: 10.1186/1471-2105-11-395.

12.

Shape-based feature matching improves protein identification via LC-MS and tandem MS.

Noy K, Towfic F, Wittenberg GM, Fasulo D.

J Comput Biol. 2011 Apr;18(4):547-57. doi: 10.1089/cmb.2010.0155. Epub 2011 Mar 21.

PMID:
21417940
13.

Chromatographic alignment of LC-MS and LC-MS/MS datasets by genetic algorithm feature extraction.

Palmblad M, Mills DJ, Bindschedler LV, Cramer R.

J Am Soc Mass Spectrom. 2007 Oct;18(10):1835-43. Epub 2007 Jul 26.

14.

BOV--a web-based BLAST output visualization tool.

Gollapudi R, Revanna KV, Hemmerich C, Schaack S, Dong Q.

BMC Genomics. 2008 Sep 15;9:414. doi: 10.1186/1471-2164-9-414.

15.

A software program for more reliable precursor ion assignation from LC-MS analysis using LTQ ultra zoom scan.

Shinkawa T, Nagano K, Inomata N, Haramura M.

J Proteomics. 2009 Dec 1;73(2):357-60. doi: 10.1016/j.jprot.2009.08.009. Epub 2009 Sep 4.

PMID:
19733703
16.

'Brukin2D': a 2D visualization and comparison tool for LC-MS data.

Tsagkrasoulis D, Zerefos P, Loudos G, Vlahou A, Baumann M, Kossida S.

BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S12. doi: 10.1186/1471-2105-10-S6-S12.

17.

Comparative LC-MS: a landscape of peaks and valleys.

America AH, Cordewener JH.

Proteomics. 2008 Feb;8(4):731-49. doi: 10.1002/pmic.200700694. Review.

PMID:
18297651
18.

Automated image alignment for 2D gel electrophoresis in a high-throughput proteomics pipeline.

Dowsey AW, Dunn MJ, Yang GZ.

Bioinformatics. 2008 Apr 1;24(7):950-7. doi: 10.1093/bioinformatics/btn059. Epub 2008 Feb 28.

19.

DCSE, an interactive tool for sequence alignment and secondary structure research.

De Rijk P, De Wachter R.

Comput Appl Biosci. 1993 Dec;9(6):735-40.

PMID:
7511479
20.

An automated method for scanning LC-MS data sets for significant peptides and proteins, including quantitative profiling and interactive confirmation.

Kaplan A, Söderström M, Fenyö D, Nilsson A, Fälth M, Sköld K, Svensson M, Pettersen H, Lindqvist S, Svenningsson P, Andrén PE, Björkesten L.

J Proteome Res. 2007 Jul;6(7):2888-95. Epub 2007 Jun 9.

PMID:
17559249
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