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Results: 1 to 20 of 86

1.

Universal and confident phosphorylation site localization using phosphoRS.

Taus T, Köcher T, Pichler P, Paschke C, Schmidt A, Henrich C, Mechtler K.

J Proteome Res. 2011 Dec 2;10(12):5354-62. doi: 10.1021/pr200611n. Epub 2011 Nov 10.

PMID:
22073976
[PubMed - indexed for MEDLINE]
2.

Confident phosphorylation site localization using the Mascot Delta Score.

Savitski MM, Lemeer S, Boesche M, Lang M, Mathieson T, Bantscheff M, Kuster B.

Mol Cell Proteomics. 2011 Feb;10(2):M110.003830. doi: 10.1074/mcp.M110.003830. Epub 2010 Nov 6.

PMID:
21057138
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

LuciPHOr: algorithm for phosphorylation site localization with false localization rate estimation using modified target-decoy approach.

Fermin D, Walmsley SJ, Gingras AC, Choi H, Nesvizhskii AI.

Mol Cell Proteomics. 2013 Nov;12(11):3409-19. doi: 10.1074/mcp.M113.028928. Epub 2013 Aug 5.

PMID:
23918812
[PubMed - indexed for MEDLINE]
4.

Pinpointing phosphorylation sites: Quantitative filtering and a novel site-specific x-ion fragment.

Kelstrup CD, Hekmat O, Francavilla C, Olsen JV.

J Proteome Res. 2011 Jul 1;10(7):2937-48. doi: 10.1021/pr200154t. Epub 2011 Apr 28.

PMID:
21526838
[PubMed - indexed for MEDLINE]
5.

A large synthetic peptide and phosphopeptide reference library for mass spectrometry-based proteomics.

Marx H, Lemeer S, Schliep JE, Matheron L, Mohammed S, Cox J, Mann M, Heck AJ, Kuster B.

Nat Biotechnol. 2013 Jun;31(6):557-64. doi: 10.1038/nbt.2585. Epub 2013 May 19.

PMID:
23685481
[PubMed - indexed for MEDLINE]
6.

PhosphoScore: an open-source phosphorylation site assignment tool for MSn data.

Ruttenberg BE, Pisitkun T, Knepper MA, Hoffert JD.

J Proteome Res. 2008 Jul;7(7):3054-9. doi: 10.1021/pr800169k. Epub 2008 Jun 11.

PMID:
18543960
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Phosphorylation site localization in peptides by MALDI MS/MS and the Mascot Delta Score.

Lemeer S, Kunold E, Klaeger S, Raabe M, Towers MW, Claudes E, Arrey TN, Strupat K, Urlaub H, Kuster B.

Anal Bioanal Chem. 2012 Jan;402(1):249-60. doi: 10.1007/s00216-011-5469-2. Epub 2011 Oct 25.

PMID:
22038583
[PubMed - indexed for MEDLINE]
8.

Multidimensional strategy for sensitive phosphoproteomics incorporating protein prefractionation combined with SIMAC, HILIC, and TiO(2) chromatography applied to proximal EGF signaling.

Engholm-Keller K, Hansen TA, Palmisano G, Larsen MR.

J Proteome Res. 2011 Dec 2;10(12):5383-97. doi: 10.1021/pr200641x. Epub 2011 Oct 26.

PMID:
21955146
[PubMed - indexed for MEDLINE]
9.

An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics: application to Drosophila melanogaster Kc167 cells.

Bodenmiller B, Mueller LN, Pedrioli PG, Pflieger D, Jünger MA, Eng JK, Aebersold R, Tao WA.

Mol Biosyst. 2007 Apr;3(4):275-86. Epub 2007 Feb 19.

PMID:
17372656
[PubMed - indexed for MEDLINE]
10.

PhosTShunter: a fast and reliable tool to detect phosphorylated peptides in liquid chromatography Fourier transform tandem mass spectrometry data sets.

Köcher T, Savitski MM, Nielsen ML, Zubarev RA.

J Proteome Res. 2006 Mar;5(3):659-68.

PMID:
16512682
[PubMed - indexed for MEDLINE]
11.

Improve the coverage for the analysis of phosphoproteome of HeLa cells by a tandem digestion approach.

Bian Y, Ye M, Song C, Cheng K, Wang C, Wei X, Zhu J, Chen R, Wang F, Zou H.

J Proteome Res. 2012 May 4;11(5):2828-37. doi: 10.1021/pr300242w. Epub 2012 Apr 11.

PMID:
22468782
[PubMed - indexed for MEDLINE]
12.

Automatic validation of phosphopeptide identifications from tandem mass spectra.

Lu B, Ruse C, Xu T, Park SK, Yates J 3rd.

Anal Chem. 2007 Feb 15;79(4):1301-10.

PMID:
17297928
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Phosphatase-directed phosphorylation-site determination: a synthesis of methods for the detection and identification of phosphopeptides.

Torres MP, Thapar R, Marzluff WF, Borchers CH.

J Proteome Res. 2005 Sep-Oct;4(5):1628-35.

PMID:
16212415
[PubMed - indexed for MEDLINE]
14.

A novel approach for untargeted post-translational modification identification using integer linear optimization and tandem mass spectrometry.

Baliban RC, DiMaggio PA, Plazas-Mayorca MD, Young NL, Garcia BA, Floudas CA.

Mol Cell Proteomics. 2010 May;9(5):764-79. doi: 10.1074/mcp.M900487-MCP200. Epub 2010 Jan 26.

PMID:
20103568
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.

Li X, Gerber SA, Rudner AD, Beausoleil SA, Haas W, Villén J, Elias JE, Gygi SP.

J Proteome Res. 2007 Mar;6(3):1190-7.

PMID:
17330950
[PubMed - indexed for MEDLINE]
16.

Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry.

Molina H, Horn DM, Tang N, Mathivanan S, Pandey A.

Proc Natl Acad Sci U S A. 2007 Feb 13;104(7):2199-204. Epub 2007 Feb 7.

PMID:
17287340
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

QuickMod: A tool for open modification spectrum library searches.

Ahrné E, Nikitin F, Lisacek F, Müller M.

J Proteome Res. 2011 Jul 1;10(7):2913-21. doi: 10.1021/pr200152g. Epub 2011 May 2.

PMID:
21500769
[PubMed - indexed for MEDLINE]
18.

Increasing phosphoproteome coverage and identification of phosphorylation motifs through combination of different HPLC fractionation methods.

Chen X, Wu D, Zhao Y, Wong BH, Guo L.

J Chromatogr B Analyt Technol Biomed Life Sci. 2011 Jan 1;879(1):25-34. doi: 10.1016/j.jchromb.2010.11.004. Epub 2010 Nov 10.

PMID:
21130716
[PubMed - indexed for MEDLINE]
19.

A probability-based approach for high-throughput protein phosphorylation analysis and site localization.

Beausoleil SA, Villén J, Gerber SA, Rush J, Gygi SP.

Nat Biotechnol. 2006 Oct;24(10):1285-92. Epub 2006 Sep 10.

PMID:
16964243
[PubMed - indexed for MEDLINE]
20.

Automated and high confidence protein phosphorylation site localization using complementary collision-activated dissociation and electron transfer dissociation tandem mass spectrometry.

Hansen TA, Sylvester M, Jensen ON, Kjeldsen F.

Anal Chem. 2012 Nov 20;84(22):9694-9. doi: 10.1021/ac302364r. Epub 2012 Oct 30.

PMID:
23061748
[PubMed - indexed for MEDLINE]

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