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1.

Role of donor genital tract HIV-1 diversity in the transmission bottleneck.

Boeras DI, Hraber PT, Hurlston M, Evans-Strickfaden T, Bhattacharya T, Giorgi EE, Mulenga J, Karita E, Korber BT, Allen S, Hart CE, Derdeyn CA, Hunter E.

Proc Natl Acad Sci U S A. 2011 Nov 15;108(46):E1156-63. doi: 10.1073/pnas.1103764108. Epub 2011 Nov 7.

PMID:
22065783
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Inflammatory genital infections mitigate a severe genetic bottleneck in heterosexual transmission of subtype A and C HIV-1.

Haaland RE, Hawkins PA, Salazar-Gonzalez J, Johnson A, Tichacek A, Karita E, Manigart O, Mulenga J, Keele BF, Shaw GM, Hahn BH, Allen SA, Derdeyn CA, Hunter E.

PLoS Pathog. 2009 Jan;5(1):e1000274. doi: 10.1371/journal.ppat.1000274. Epub 2009 Jan 23.

PMID:
19165325
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Sexually-transmitted/founder HIV-1 cannot be directly predicted from plasma or PBMC-derived viral quasispecies in the transmitting partner.

Frange P, Meyer L, Jung M, Goujard C, Zucman D, Abel S, Hochedez P, Gousset M, Gascuel O, Rouzioux C, Chaix ML; ANRS PRIMO Cohort Study Group.

PLoS One. 2013 Jul 9;8(7):e69144. doi: 10.1371/journal.pone.0069144. Print 2013.

PMID:
23874894
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Early archives of genetically-restricted proviral DNA in the female genital tract after heterosexual transmission of HIV-1.

Chomont N, Hocini H, Grésenguet G, Brochier C, Bouhlal H, Andréoletti L, Becquart P, Charpentier C, de Dieu Longo J, Si-Mohamed A, Kazatchkine MD, Bélec L.

AIDS. 2007 Jan 11;21(2):153-62.

PMID:
17197805
[PubMed - indexed for MEDLINE]
5.

Restricted genetic diversity of HIV-1 subtype C envelope glycoprotein from perinatally infected Zambian infants.

Zhang H, Tully DC, Hoffmann FG, He J, Kankasa C, Wood C.

PLoS One. 2010 Feb 18;5(2):e9294. doi: 10.1371/journal.pone.0009294. Erratum in: PLoS One. 2010;5(3). doi: 10.1371/annotation/c2dd3548-93b7-480e-991a-93a728bca5fe. PLoS One. 2010;5(3). doi: 10.1371/annotation/eadee58d-56c0-4399-b007-d80cc71e3f8a.

PMID:
20174636
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Human immunodeficiency virus type 1 genomic RNA sequences in the female genital tract and blood: compartmentalization and intrapatient recombination.

Philpott S, Burger H, Tsoukas C, Foley B, Anastos K, Kitchen C, Weiser B.

J Virol. 2005 Jan;79(1):353-63.

PMID:
15596829
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Primary infections with HIV-1 of women and their offspring in Rwanda: findings of heterogeneity at seroconversion, coinfection, and recombinants of HIV-1 subtypes A and C.

Kampinga GA, Simonon A, Van de Perre P, Karita E, Msellati P, Goudsmit J.

Virology. 1997 Jan 6;227(1):63-76.

PMID:
9007059
[PubMed - indexed for MEDLINE]
Free Article
8.

Diversity in virus populations from genital secretions and peripheral blood from women recently infected with human immunodeficiency virus type 1.

Poss M, Martin HL, Kreiss JK, Granville L, Chohan B, Nyange P, Mandaliya K, Overbaugh J.

J Virol. 1995 Dec;69(12):8118-22.

PMID:
7494333
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Compartmentalization of HIV-1 within the female genital tract is due to monotypic and low-diversity variants not distinct viral populations.

Bull M, Learn G, Genowati I, McKernan J, Hitti J, Lockhart D, Tapia K, Holte S, Dragavon J, Coombs R, Mullins J, Frenkel L.

PLoS One. 2009 Sep 22;4(9):e7122. doi: 10.1371/journal.pone.0007122.

PMID:
19771165
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Genetic characterization of human immunodeficiency virus type 1 in blood and genital secretions: evidence for viral compartmentalization and selection during sexual transmission.

Zhu T, Wang N, Carr A, Nam DS, Moor-Jankowski R, Cooper DA, Ho DD.

J Virol. 1996 May;70(5):3098-107.

PMID:
8627789
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Previously transmitted HIV-1 strains are preferentially selected during subsequent sexual transmissions.

Redd AD, Collinson-Streng AN, Chatziandreou N, Mullis CE, Laeyendecker O, Martens C, Ricklefs S, Kiwanuka N, Nyein PH, Lutalo T, Grabowski MK, Kong X, Manucci J, Sewankambo N, Wawer MJ, Gray RH, Porcella SF, Fauci AS, Sagar M, Serwadda D, Quinn TC.

J Infect Dis. 2012 Nov;206(9):1433-42. doi: 10.1093/infdis/jis503. Epub 2012 Sep 19. Erratum in: J Infect Dis. 2013 Feb 1;207(3):546.

PMID:
22997233
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Transmission of single and multiple viral variants in primary HIV-1 subtype C infection.

Novitsky V, Wang R, Margolin L, Baca J, Rossenkhan R, Moyo S, van Widenfelt E, Essex M.

PLoS One. 2011 Feb 9;6(2):e16714. doi: 10.1371/journal.pone.0016714.

PMID:
21415914
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Evolution of envelope sequences from the genital tract and peripheral blood of women infected with clade A human immunodeficiency virus type 1.

Poss M, Rodrigo AG, Gosink JJ, Learn GH, de Vange Panteleeff D, Martin HL Jr, Bwayo J, Kreiss JK, Overbaugh J.

J Virol. 1998 Oct;72(10):8240-51.

PMID:
9733867
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Genetic variation in mother-child acute seroconverter pairs from Zambia.

Hoffmann FG, He X, West JT, Lemey P, Kankasa C, Wood C.

AIDS. 2008 Apr 23;22(7):817-24. doi: 10.1097/QAD.0b013e3282f486af.

PMID:
18427199
[PubMed - indexed for MEDLINE]
15.

The genetic bottleneck in vertical transmission of subtype C HIV-1 is not driven by selection of especially neutralization-resistant virus from the maternal viral population.

Russell ES, Kwiek JJ, Keys J, Barton K, Mwapasa V, Montefiori DC, Meshnick SR, Swanstrom R.

J Virol. 2011 Aug;85(16):8253-62. doi: 10.1128/JVI.00197-11. Epub 2011 May 18.

PMID:
21593171
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

New heterosexually transmitted HIV infections in married or cohabiting couples in urban Zambia and Rwanda: an analysis of survey and clinical data.

Dunkle KL, Stephenson R, Karita E, Chomba E, Kayitenkore K, Vwalika C, Greenberg L, Allen S.

Lancet. 2008 Jun 28;371(9631):2183-91. doi: 10.1016/S0140-6736(08)60953-8.

PMID:
18586173
[PubMed - indexed for MEDLINE]
17.

The selection and evolution of viral quasispecies in HIV-1 infected children.

Nowak P, Karlsson AC, Naver L, Bohlin AB, Piasek A, Sönnerborg A.

HIV Med. 2002 Jan;3(1):1-11.

PMID:
12059945
[PubMed - indexed for MEDLINE]
18.

HIV-1 in genital tract and plasma of women: compartmentalization of viral sequences, coreceptor usage, and glycosylation.

Kemal KS, Foley B, Burger H, Anastos K, Minkoff H, Kitchen C, Philpott SM, Gao W, Robison E, Holman S, Dehner C, Beck S, Meyer WA 3rd, Landay A, Kovacs A, Bremer J, Weiser B.

Proc Natl Acad Sci U S A. 2003 Oct 28;100(22):12972-7. Epub 2003 Oct 13.

PMID:
14557540
[PubMed - indexed for MEDLINE]
Free PMC Article
19.
20.

Passive sexual transmission of human immunodeficiency virus type 1 variants and adaptation in new hosts.

Frater AJ, Edwards CT, McCarthy N, Fox J, Brown H, Milicic A, Mackie N, Pillay T, Drijfhout JW, Dustan S, Clarke JR, Holmes EC, Zhang HT, Pfafferott K, Goulder PJ, McClure MO, Weber J, Phillips RE, Fidler S.

J Virol. 2006 Jul;80(14):7226-34.

PMID:
16809328
[PubMed - indexed for MEDLINE]
Free PMC Article
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