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Results: 1 to 20 of 107

1.

Genomic diversity in switchgrass (Panicum virgatum): from the continental scale to a dune landscape.

Morris GP, Grabowski PP, Borevitz JO.

Mol Ecol. 2011 Dec;20(23):4938-52. doi: 10.1111/j.1365-294X.2011.05335.x. Epub 2011 Nov 8.

PMID:
22060816
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

SNP discovery with EST and NextGen sequencing in switchgrass (Panicum virgatum L.).

Ersoz ES, Wright MH, Pangilinan JL, Sheehan MJ, Tobias C, Casler MD, Buckler ES, Costich DE.

PLoS One. 2012;7(9):e44112. doi: 10.1371/journal.pone.0044112. Epub 2012 Sep 25.

PMID:
23049744
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Switchgrass genomic diversity, ploidy, and evolution: novel insights from a network-based SNP discovery protocol.

Lu F, Lipka AE, Glaubitz J, Elshire R, Cherney JH, Casler MD, Buckler ES, Costich DE.

PLoS Genet. 2013;9(1):e1003215. doi: 10.1371/journal.pgen.1003215. Epub 2013 Jan 17.

PMID:
23349638
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Post-glacial evolution of Panicum virgatum: centers of diversity and gene pools revealed by SSR markers and cpDNA sequences.

Zhang Y, Zalapa JE, Jakubowski AR, Price DL, Acharya A, Wei Y, Brummer EC, Kaeppler SM, Casler MD.

Genetica. 2011 Jul;139(7):933-48. doi: 10.1007/s10709-011-9597-6. Epub 2011 Jul 23.

PMID:
21786028
[PubMed - indexed for MEDLINE]
5.

Population genomic variation reveals roles of history, adaptation and ploidy in switchgrass.

Grabowski PP, Morris GP, Casler MD, Borevitz JO.

Mol Ecol. 2014 Aug;23(16):4059-73. doi: 10.1111/mec.12845. Epub 2014 Jul 21.

PMID:
24962137
[PubMed - in process]
6.

Hierarchical classification of switchgrass genotypes using SSR and chloroplast sequences: ecotypes, ploidies, gene pools, and cultivars.

Zalapa JE, Price DL, Kaeppler SM, Tobias CM, Okada M, Casler MD.

Theor Appl Genet. 2011 Mar;122(4):805-17. doi: 10.1007/s00122-010-1488-1. Epub 2010 Nov 23.

PMID:
21104398
[PubMed - indexed for MEDLINE]
7.

Phylogeography of Camellia taliensis (Theaceae) inferred from chloroplast and nuclear DNA: insights into evolutionary history and conservation.

Liu Y, Yang SX, Ji PZ, Gao LZ.

BMC Evol Biol. 2012 Jun 21;12:92. doi: 10.1186/1471-2148-12-92.

PMID:
22716114
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Chloroplast genome variation in upland and lowland switchgrass.

Young HA, Lanzatella CL, Sarath G, Tobias CM.

PLoS One. 2011;6(8):e23980. doi: 10.1371/journal.pone.0023980. Epub 2011 Aug 24.

PMID:
21887356
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Low genetic diversity, moderate local adaptation, and phylogeographic insights in Cornus nuttallii (Cornaceae).

Keir KR, Bemmels JB, Aitken SN.

Am J Bot. 2011 Aug;98(8):1327-36. doi: 10.3732/ajb.1000466.

PMID:
21821593
[PubMed - indexed for MEDLINE]
Free Article
10.

Genomic diversity, population structure, and migration following rapid range expansion in the Balsam poplar, Populus balsamifera.

Keller SR, Olson MS, Silim S, Schroeder W, Tiffin P.

Mol Ecol. 2010 Mar;19(6):1212-26. doi: 10.1111/j.1365-294X.2010.04546.x. Epub 2010 Feb 15.

PMID:
20163548
[PubMed - indexed for MEDLINE]
11.

Nucleotide polymorphism and copy number variant detection using exome capture and next-generation sequencing in the polyploid grass Panicum virgatum.

Evans J, Kim J, Childs KL, Vaillancourt B, Crisovan E, Nandety A, Gerhardt DJ, Richmond TA, Jeddeloh JA, Kaeppler SM, Casler MD, Buell CR.

Plant J. 2014 Jun 20. doi: 10.1111/tpj.12601. [Epub ahead of print]

PMID:
24947485
[PubMed - as supplied by publisher]
12.

Large-scale phylogeography of the disjunct Neotropical tree species Schizolobium parahyba (Fabaceae-Caesalpinioideae).

Turchetto-Zolet AC, Cruz F, Vendramin GG, Simon MF, Salgueiro F, Margis-Pinheiro M, Margis R.

Mol Phylogenet Evol. 2012 Oct;65(1):174-82. doi: 10.1016/j.ympev.2012.06.012. Epub 2012 Jun 26.

PMID:
22750114
[PubMed - indexed for MEDLINE]
Free Article
13.

Next-Gen phylogeography of rainforest trees: exploring landscape-level cpDNA variation from whole-genome sequencing.

van der Merwe M, McPherson H, Siow J, Rossetto M.

Mol Ecol Resour. 2014 Jan;14(1):199-208. doi: 10.1111/1755-0998.12176. Epub 2013 Oct 25.

PMID:
24119022
[PubMed - indexed for MEDLINE]
14.

Development of 1,030 genomic SSR markers in switchgrass.

Wang YW, Samuels TD, Wu YQ.

Theor Appl Genet. 2011 Mar;122(4):677-86. doi: 10.1007/s00122-010-1477-4. Epub 2010 Oct 27.

PMID:
20978736
[PubMed - indexed for MEDLINE]
15.

Capturing chloroplast variation for molecular ecology studies: a simple next generation sequencing approach applied to a rainforest tree.

McPherson H, van der Merwe M, Delaney SK, Edwards MA, Henry RJ, McIntosh E, Rymer PD, Milner ML, Siow J, Rossetto M.

BMC Ecol. 2013 Mar 14;13:8. doi: 10.1186/1472-6785-13-8.

PMID:
23497206
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

New genomic resources for switchgrass: a BAC library and comparative analysis of homoeologous genomic regions harboring bioenergy traits.

Saski CA, Li Z, Feltus FA, Luo H.

BMC Genomics. 2011 Jul 18;12:369. doi: 10.1186/1471-2164-12-369.

PMID:
21767393
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

From glacial refugia to modern populations: new assemblages of organelle genomes generated by differential cytoplasmic gene flow in transcontinental black spruce.

GĂ©rardi S, Jaramillo-Correa JP, Beaulieu J, Bousquet J.

Mol Ecol. 2010 Dec;19(23):5265-80. doi: 10.1111/j.1365-294X.2010.04881.x. Epub 2010 Nov 2.

PMID:
21044193
[PubMed - indexed for MEDLINE]
18.

Five nuclear loci resolve the polyploid history of switchgrass (Panicum virgatum L.) and relatives.

Triplett JK, Wang Y, Zhong J, Kellogg EA.

PLoS One. 2012;7(6):e38702. doi: 10.1371/journal.pone.0038702. Epub 2012 Jun 18.

PMID:
22719924
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

A genome-wide survey of switchgrass genome structure and organization.

Sharma MK, Sharma R, Cao P, Jenkins J, Bartley LE, Qualls M, Grimwood J, Schmutz J, Rokhsar D, Ronald PC.

PLoS One. 2012;7(4):e33892. doi: 10.1371/journal.pone.0033892. Epub 2012 Apr 12.

PMID:
22511929
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Karyotype variation is indicative of subgenomic and ecotypic differentiation in switchgrass.

Young HA, Sarath G, Tobias CM.

BMC Plant Biol. 2012 Jul 26;12:117. doi: 10.1186/1471-2229-12-117.

PMID:
22834676
[PubMed - indexed for MEDLINE]
Free PMC Article

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