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Use of haplotypes to estimate Mendelian sampling effects and selection limits.

Cole JB, VanRaden PM.

J Anim Breed Genet. 2011 Dec;128(6):446-55. doi: 10.1111/j.1439-0388.2011.00922.x. Epub 2011 Apr 13.


Evaluation of single nucleotide polymorphisms in chromosomal regions impacting pregnancy status in cattle.

Psaros KM, McDaneld TG, Kuehn LA, Snelling WM, Keele JW.

J Anim Sci. 2015 Mar;93(3):978-87. doi: 10.2527/jas.2014-8509.


Recent artificial selection in U.S. Jersey cattle impacts autozygosity levels of specific genomic regions.

Kim ES, Sonstegard TS, Rothschild MF.

BMC Genomics. 2015 Apr 16;16:302. doi: 10.1186/s12864-015-1500-x.


Predicting haplotype carriers from SNP genotypes in Bos taurus through linear discriminant analysis.

Biffani S, Dimauro C, Macciotta N, Rossoni A, Stella A, Biscarini F.

Genet Sel Evol. 2015 Feb 5;47:4. doi: 10.1186/s12711-015-0094-8.


Prediction of expected genetic variation within groups of offspring for innovative mating schemes.

Segelke D, Reinhardt F, Liu Z, Thaller G.

Genet Sel Evol. 2014 Jul 2;46:42. doi: 10.1186/1297-9686-46-42.


Genomic evaluation, breed identification, and discovery of a haplotype affecting fertility for Ayrshire dairy cattle.

Cooper TA, Wiggans GR, Null DJ, Hutchison JL, Cole JB.

J Dairy Sci. 2014;97(6):3878-82. doi: 10.3168/jds.2013-7427. Epub 2014 Mar 27.


Bovine exome sequence analysis and targeted SNP genotyping of recessive fertility defects BH1, HH2, and HH3 reveal a putative causative mutation in SMC2 for HH3.

McClure MC, Bickhart D, Null D, Vanraden P, Xu L, Wiggans G, Liu G, Schroeder S, Glasscock J, Armstrong J, Cole JB, Van Tassell CP, Sonstegard TS.

PLoS One. 2014 Mar 25;9(3):e92769. doi: 10.1371/journal.pone.0092769. eCollection 2014.


Mating programs including genomic relationships and dominance effects.

Sun C, VanRaden PM, O'Connell JR, Weigel KA, Gianola D.

J Dairy Sci. 2013;96(12):8014-23. doi: 10.3168/jds.2013-6969. Epub 2013 Oct 11.


Imputation of microsatellite alleles from dense SNP genotypes for parentage verification across multiple Bos taurus and Bos indicus breeds.

McClure MC, Sonstegard TS, Wiggans GR, Van Eenennaam AL, Weber KL, Penedo CT, Berry DP, Flynn J, Garcia JF, Carmo AS, Regitano LC, Albuquerque M, Silva MV, Machado MA, Coffey M, Moore K, Boscher MY, Genestout L, Mazza R, Taylor JF, Schnabel RD, Simpson B, Marques E, McEwan JC, Cromie A, Coutinho LL, Kuehn LA, Keele JW, Piper EK, Cook J, Williams R; Bovine HapMap Consortium, Van Tassell CP.

Front Genet. 2013 Sep 18;4:176. doi: 10.3389/fgene.2013.00176. eCollection 2013.


Detection of haplotypes associated with prenatal death in dairy cattle and identification of deleterious mutations in GART, SHBG and SLC37A2.

Fritz S, Capitan A, Djari A, Rodriguez SC, Barbat A, Baur A, Grohs C, Weiss B, Boussaha M, Esquerré D, Klopp C, Rocha D, Boichard D.

PLoS One. 2013 Jun 7;8(6):e65550. doi: 10.1371/journal.pone.0065550. Print 2013.


Identification of a nonsense mutation in CWC15 associated with decreased reproductive efficiency in Jersey cattle.

Sonstegard TS, Cole JB, VanRaden PM, Van Tassell CP, Null DJ, Schroeder SG, Bickhart D, McClure MC.

PLoS One. 2013;8(1):e54872. doi: 10.1371/journal.pone.0054872. Epub 2013 Jan 22.


Confirmation and discovery of maternal grandsires and great-grandsires in dairy cattle.

VanRaden PM, Cooper TA, Wiggans GR, O'Connell JR, Bacheller LR.

J Dairy Sci. 2013 Mar;96(3):1874-9. doi: 10.3168/jds.2012-6176. Epub 2013 Jan 16.


Limits to patient selection.

Farooqui N.

Virtual Mentor. 2011 Mar 1;13(3):152-5. doi: 10.1001/virtualmentor.2011.13.3.ccas3-1103. No abstract available.


Reliability of genomic prediction for German Holsteins using imputed genotypes from low-density chips.

Segelke D, Chen J, Liu Z, Reinhardt F, Thaller G, Reents R.

J Dairy Sci. 2012 Sep;95(9):5403-11. doi: 10.3168/jds.2012-5466.


Imputation of microsatellite alleles from dense SNP genotypes for parental verification.

McClure M, Sonstegard T, Wiggans G, Van Tassell CP.

Front Genet. 2012 Aug 14;3:140. doi: 10.3389/fgene.2012.00140. eCollection 2012.


Whole-genome resequencing of two elite sires for the detection of haplotypes under selection in dairy cattle.

Larkin DM, Daetwyler HD, Hernandez AG, Wright CL, Hetrick LA, Boucek L, Bachman SL, Band MR, Akraiko TV, Cohen-Zinder M, Thimmapuram J, Macleod IM, Harkins TT, McCague JE, Goddard ME, Hayes BJ, Lewin HA.

Proc Natl Acad Sci U S A. 2012 May 15;109(20):7693-8. doi: 10.1073/pnas.1114546109. Epub 2012 Apr 23.


Association of toll-like receptor 2 polymorphisms with somatic cell score in Xinjiang Brown cattle.

Bai J, Lin J, Li W, Liu M.

Anim Sci J. 2012 Jan;83(1):23-30. doi: 10.1111/j.1740-0929.2011.00909.x. Epub 2011 Aug 3.


Reliability of direct genomic values for animals with different relationships within and to the reference population.

Pszczola M, Strabel T, Mulder HA, Calus MP.

J Dairy Sci. 2012 Jan;95(1):389-400. doi: 10.3168/jds.2011-4338.


Novel strategies to minimize progeny inbreeding while maximizing genetic gain using genomic information.

Pryce JE, Hayes BJ, Goddard ME.

J Dairy Sci. 2012 Jan;95(1):377-88. doi: 10.3168/jds.2011-4254.

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