Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 121

1.

Genome-wide transcriptome analysis in murine neural retina using high-throughput RNA sequencing.

Gamsiz ED, Ouyang Q, Schmidt M, Nagpal S, Morrow EM.

Genomics. 2012 Jan;99(1):44-51. doi: 10.1016/j.ygeno.2011.09.003. Epub 2011 Oct 1.

PMID:
22032952
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Next-generation sequencing facilitates quantitative analysis of wild-type and Nrl(-/-) retinal transcriptomes.

Brooks MJ, Rajasimha HK, Roger JE, Swaroop A.

Mol Vis. 2011;17:3034-54. Epub 2011 Nov 23.

PMID:
22162623
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Analysis of transcriptome complexity through RNA sequencing in normal and failing murine hearts.

Lee JH, Gao C, Peng G, Greer C, Ren S, Wang Y, Xiao X.

Circ Res. 2011 Dec 9;109(12):1332-41. doi: 10.1161/CIRCRESAHA.111.249433. Epub 2011 Oct 27.

PMID:
22034492
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Retinal transcriptome profiling by directional next-generation sequencing using 100 ng of total RNA.

Brooks MJ, Rajasimha HK, Swaroop A.

Methods Mol Biol. 2012;884:319-34. doi: 10.1007/978-1-61779-848-1_23.

PMID:
22688717
[PubMed - indexed for MEDLINE]
5.

Transcriptome analysis of the silkworm (Bombyx mori) by high-throughput RNA sequencing.

Li Y, Wang G, Tian J, Liu H, Yang H, Yi Y, Wang J, Shi X, Jiang F, Yao B, Zhang Z.

PLoS One. 2012;7(8):e43713. doi: 10.1371/journal.pone.0043713. Epub 2012 Aug 23.

PMID:
22928022
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A global view of porcine transcriptome in three tissues from a full-sib pair with extreme phenotypes in growth and fat deposition by paired-end RNA sequencing.

Chen C, Ai H, Ren J, Li W, Li P, Qiao R, Ouyang J, Yang M, Ma J, Huang L.

BMC Genomics. 2011 Sep 10;12:448. doi: 10.1186/1471-2164-12-448.

PMID:
21906321
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Comprehensive structural annotation of Pichia pastoris transcriptome and the response to various carbon sources using deep paired-end RNA sequencing.

Liang S, Wang B, Pan L, Ye Y, He M, Han S, Zheng S, Wang X, Lin Y.

BMC Genomics. 2012 Dec 31;13:738. doi: 10.1186/1471-2164-13-738.

PMID:
23276294
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Transcriptome analysis using next generation sequencing reveals molecular signatures of diabetic retinopathy and efficacy of candidate drugs.

Kandpal RP, Rajasimha HK, Brooks MJ, Nellissery J, Wan J, Qian J, Kern TS, Swaroop A.

Mol Vis. 2012;18:1123-46. Epub 2012 May 2.

PMID:
22605924
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

BowStrap v1.0: Assigning statistical significance to expressed genes using short-read transcriptome data.

Larsen PE, Collart FR.

BMC Res Notes. 2012 Jun 7;5:275. doi: 10.1186/1756-0500-5-275.

PMID:
22676709
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

How to analyze gene expression using RNA-sequencing data.

Ramsköld D, Kavak E, Sandberg R.

Methods Mol Biol. 2012;802:259-74. doi: 10.1007/978-1-61779-400-1_17.

PMID:
22130886
[PubMed - indexed for MEDLINE]
11.

RNA-Seq: a method for comprehensive transcriptome analysis.

Nagalakshmi U, Waern K, Snyder M.

Curr Protoc Mol Biol. 2010 Jan;Chapter 4:Unit 4.11.1-13. doi: 10.1002/0471142727.mb0411s89.

PMID:
20069539
[PubMed - indexed for MEDLINE]
12.

Transcriptome analysis of the model protozoan, Tetrahymena thermophila, using Deep RNA sequencing.

Xiong J, Lu X, Zhou Z, Chang Y, Yuan D, Tian M, Zhou Z, Wang L, Fu C, Orias E, Miao W.

PLoS One. 2012;7(2):e30630. doi: 10.1371/journal.pone.0030630. Epub 2012 Feb 7.

PMID:
22347391
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Differentially expressed alternatively spliced genes in malignant pleural mesothelioma identified using massively parallel transcriptome sequencing.

Dong L, Jensen RV, De Rienzo A, Gordon GJ, Xu Y, Sugarbaker DJ, Bueno R.

BMC Med Genet. 2009 Dec 31;10:149. doi: 10.1186/1471-2350-10-149.

PMID:
20043850
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Transcriptome analysis using RNA-Seq.

Hoeijmakers WA, Bártfai R, Stunnenberg HG.

Methods Mol Biol. 2013;923:221-39.

PMID:
22990781
[PubMed - indexed for MEDLINE]
15.

Deep sequencing the circadian and diurnal transcriptome of Drosophila brain.

Hughes ME, Grant GR, Paquin C, Qian J, Nitabach MN.

Genome Res. 2012 Jul;22(7):1266-81. doi: 10.1101/gr.128876.111. Epub 2012 Apr 3.

PMID:
22472103
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens.

Wang Y, Ghaffari N, Johnson CD, Braga-Neto UM, Wang H, Chen R, Zhou H.

BMC Bioinformatics. 2011 Oct 18;12 Suppl 10:S5. doi: 10.1186/1471-2105-12-S10-S5.

PMID:
22165852
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Comprehensive analysis of photoreceptor gene expression and the identification of candidate retinal disease genes.

Blackshaw S, Fraioli RE, Furukawa T, Cepko CL.

Cell. 2001 Nov 30;107(5):579-89.

PMID:
11733058
[PubMed - indexed for MEDLINE]
Free Article
18.

High-throughput RNA sequencing in B-cell lymphomas.

Xiao W, Tran B, Staudt LM, Schmitz R.

Methods Mol Biol. 2013;971:295-312. doi: 10.1007/978-1-62703-269-8_17.

PMID:
23296971
[PubMed - indexed for MEDLINE]
19.

RNA-Seq provides new insights in the transcriptome responses induced by the carcinogen benzo[a]pyrene.

van Delft J, Gaj S, Lienhard M, Albrecht MW, Kirpiy A, Brauers K, Claessen S, Lizarraga D, Lehrach H, Herwig R, Kleinjans J.

Toxicol Sci. 2012 Dec;130(2):427-39. doi: 10.1093/toxsci/kfs250. Epub 2012 Aug 13.

PMID:
22889811
[PubMed - indexed for MEDLINE]
Free Article
20.

Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensive in silico assessment of RNA-seq experiments.

Vijay N, Poelstra JW, Künstner A, Wolf JB.

Mol Ecol. 2013 Feb;22(3):620-34. doi: 10.1111/mec.12014. Epub 2012 Sep 24.

PMID:
22998089
[PubMed - indexed for MEDLINE]

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk