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Items: 1 to 20 of 136

1.

The Reactome BioMart.

Haw RA, Croft D, Yung CK, Ndegwa N, D'Eustachio P, Hermjakob H, Stein LD.

Database (Oxford). 2011 Oct 19;2011:bar031. doi: 10.1093/database/bar031. Print 2011.

2.

Reactome pathway analysis to enrich biological discovery in proteomics data sets.

Haw R, Hermjakob H, D'Eustachio P, Stein L.

Proteomics. 2011 Sep;11(18):3598-613. doi: 10.1002/pmic.201100066.

3.

Reactome: a database of reactions, pathways and biological processes.

Croft D, O'Kelly G, Wu G, Haw R, Gillespie M, Matthews L, Caudy M, Garapati P, Gopinath G, Jassal B, Jupe S, Kalatskaya I, Mahajan S, May B, Ndegwa N, Schmidt E, Shamovsky V, Yung C, Birney E, Hermjakob H, D'Eustachio P, Stein L.

Nucleic Acids Res. 2011 Jan;39(Database issue):D691-7. doi: 10.1093/nar/gkq1018. Epub 2010 Nov 9.

4.

Using the reactome database.

Haw R, Stein L.

Curr Protoc Bioinformatics. 2012 Jun;Chapter 8:Unit8.7. doi: 10.1002/0471250953.bi0807s38.

5.

The InterPro BioMart: federated query and web service access to the InterPro Resource.

Jones P, Binns D, McMenamin C, McAnulla C, Hunter S.

Database (Oxford). 2011 Jul 23;2011:bar033. doi: 10.1093/database/bar033. Print 2011.

6.

BioMart--biological queries made easy.

Smedley D, Haider S, Ballester B, Holland R, London D, Thorisson G, Kasprzyk A.

BMC Genomics. 2009 Jan 14;10:22. doi: 10.1186/1471-2164-10-22.

7.

BioMart: a data federation framework for large collaborative projects.

Zhang J, Haider S, Baran J, Cros A, Guberman JM, Hsu J, Liang Y, Yao L, Kasprzyk A.

Database (Oxford). 2011 Sep 19;2011:bar038. doi: 10.1093/database/bar038. Print 2011.

8.

Reactome: a knowledgebase of biological pathways.

Joshi-Tope G, Gillespie M, Vastrik I, D'Eustachio P, Schmidt E, de Bono B, Jassal B, Gopinath GR, Wu GR, Matthews L, Lewis S, Birney E, Stein L.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D428-32.

9.

Reactome knowledgebase of human biological pathways and processes.

Matthews L, Gopinath G, Gillespie M, Caudy M, Croft D, de Bono B, Garapati P, Hemish J, Hermjakob H, Jassal B, Kanapin A, Lewis S, Mahajan S, May B, Schmidt E, Vastrik I, Wu G, Birney E, Stein L, D'Eustachio P.

Nucleic Acids Res. 2009 Jan;37(Database issue):D619-22. doi: 10.1093/nar/gkn863. Epub 2008 Nov 3.

10.

The Reactome pathway knowledgebase.

Croft D, Mundo AF, Haw R, Milacic M, Weiser J, Wu G, Caudy M, Garapati P, Gillespie M, Kamdar MR, Jassal B, Jupe S, Matthews L, May B, Palatnik S, Rothfels K, Shamovsky V, Song H, Williams M, Birney E, Hermjakob H, Stein L, D'Eustachio P.

Nucleic Acids Res. 2014 Jan;42(Database issue):D472-7. doi: 10.1093/nar/gkt1102. Epub 2013 Nov 15.

11.

Reactome: a knowledge base of biologic pathways and processes.

Vastrik I, D'Eustachio P, Schmidt E, Gopinath G, Croft D, de Bono B, Gillespie M, Jassal B, Lewis S, Matthews L, Wu G, Birney E, Stein L.

Genome Biol. 2007;8(3):R39. Erratum in: Genome Biol. 2009 Feb 4;10(2):402. Joshi-Tope, Geeta [removed].

12.

Installing a local copy of the Reactome Web site and database.

Vastrik I.

Curr Protoc Bioinformatics. 2008 Mar;Chapter 9:Unit 9.10. doi: 10.1002/0471250953.bi0910s21.

PMID:
18428688
13.

Reconn: a cytoscape plug-in for exploring and visualizing reactome.

Ligtenberg WP, Bošnački D, Hilbers PA.

J Bioinform Comput Biol. 2013 Aug;11(4):1350004. doi: 10.1142/S0219720013500042. Epub 2013 Mar 18.

PMID:
23859268
14.

BioMart Central Portal--unified access to biological data.

Haider S, Ballester B, Smedley D, Zhang J, Rice P, Kasprzyk A.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W23-7. doi: 10.1093/nar/gkp265. Epub 2009 May 6.

15.

HPD: an online integrated human pathway database enabling systems biology studies.

Chowbina SR, Wu X, Zhang F, Li PM, Pandey R, Kasamsetty HN, Chen JY.

BMC Bioinformatics. 2009 Oct 8;10 Suppl 11:S5. doi: 10.1186/1471-2105-10-S11-S5.

16.
17.

Interactive web service system for exploration of biological pathways.

Yin ZX, Li SY.

Artif Intell Med. 2014 Sep;62(1):61-72. doi: 10.1016/j.artmed.2014.07.002. Epub 2014 Jul 19.

PMID:
25091171
18.

A survey of metabolic databases emphasizing the MetaCyc family.

Karp PD, Caspi R.

Arch Toxicol. 2011 Sep;85(9):1015-33. doi: 10.1007/s00204-011-0705-2. Epub 2011 Apr 27. Review.

19.

A scalable and integrative system for pathway bioinformatics and systems biology.

Compani B, Su T, Chang I, Cheng J, Shah KH, Whisenant T, Dou Y, Bergmann A, Cheong R, Wold B, Bardwell L, Levchenko A, Baldi P, Mjolsness E.

Adv Exp Med Biol. 2010;680:523-34. doi: 10.1007/978-1-4419-5913-3_58.

20.

Using BioMart as a framework to manage and query pancreatic cancer data.

Cutts RJ, Gadaleta E, Lemoine NR, Chelala C.

Database (Oxford). 2011 Jun 11;2011:bar024. doi: 10.1093/database/bar024. Print 2011.

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