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Results: 1 to 20 of 131

1.

Identity-by-descent-based phasing and imputation in founder populations using graphical models.

Palin K, Campbell H, Wright AF, Wilson JF, Durbin R.

Genet Epidemiol. 2011 Dec;35(8):853-60. doi: 10.1002/gepi.20635. Epub 2011 Oct 17.

PMID:
22006673
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

A combined long-range phasing and long haplotype imputation method to impute phase for SNP genotypes.

Hickey JM, Kinghorn BP, Tier B, Wilson JF, Dunstan N, van der Werf JH.

Genet Sel Evol. 2011 Mar 10;43:12. doi: 10.1186/1297-9686-43-12.

PMID:
21388557
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Genotype phasing in populations of closely related individuals.

Hickey JM.

Methods Mol Biol. 2013;1019:381-94. doi: 10.1007/978-1-62703-447-0_16.

PMID:
23756900
[PubMed - indexed for MEDLINE]
4.

Detection of sharing by descent, long-range phasing and haplotype imputation.

Kong A, Masson G, Frigge ML, Gylfason A, Zusmanovich P, Thorleifsson G, Olason PI, Ingason A, Steinberg S, Rafnar T, Sulem P, Mouy M, Jonsson F, Thorsteinsdottir U, Gudbjartsson DF, Stefansson H, Stefansson K.

Nat Genet. 2008 Sep;40(9):1068-75. doi: 10.1038/ng.216.

PMID:
19165921
[PubMed - indexed for MEDLINE]
5.

A phasing and imputation method for pedigreed populations that results in a single-stage genomic evaluation.

Hickey JM, Kinghorn BP, Tier B, van der Werf JH, Cleveland MA.

Genet Sel Evol. 2012 Jun 19;44:9. doi: 10.1186/1297-9686-44-9.

PMID:
22462519
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Improving the accuracy and efficiency of identity-by-descent detection in population data.

Browning BL, Browning SR.

Genetics. 2013 Jun;194(2):459-71. doi: 10.1534/genetics.113.150029. Epub 2013 Mar 27.

PMID:
23535385
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Hap-seq: an optimal algorithm for haplotype phasing with imputation using sequencing data.

He D, Han B, Eskin E.

J Comput Biol. 2013 Feb;20(2):80-92. doi: 10.1089/cmb.2012.0091.

PMID:
23383995
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Detection of recombination events, haplotype reconstruction and imputation of sires using half-sib SNP genotypes.

Ferdosi MH, Kinghorn BP, van der Werf JH, Gondro C.

Genet Sel Evol. 2014 Feb 4;46:11. doi: 10.1186/1297-9686-46-11.

PMID:
24495596
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Genotype imputation to increase sample size in pedigreed populations.

Hickey JM, Cleveland MA, Maltecca C, Gorjanc G, Gredler B, Kranis A.

Methods Mol Biol. 2013;1019:395-410. doi: 10.1007/978-1-62703-447-0_17.

PMID:
23756901
[PubMed - indexed for MEDLINE]
10.

Extending long-range phasing and haplotype library imputation methods to impute genotypes on sex chromosomes.

Hickey JM, Kranis A.

Genet Sel Evol. 2013 Apr 25;45:10. doi: 10.1186/1297-9686-45-10.

PMID:
23617460
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Highly scalable genotype phasing by entropy minimization.

Gusev A, Măndoiu II, Paşaniuc B.

IEEE/ACM Trans Comput Biol Bioinform. 2008 Apr-Jun;5(2):252-61. doi: 10.1109/TCBB.2007.70223.

PMID:
18451434
[PubMed - indexed for MEDLINE]
12.

Hap-seqX: expedite algorithm for haplotype phasing with imputation using sequence data.

He D, Eskin E.

Gene. 2013 Apr 10;518(1):2-6. doi: 10.1016/j.gene.2012.11.093. Epub 2012 Dec 23.

PMID:
23269365
[PubMed - indexed for MEDLINE]
13.

The use of family relationships and linkage disequilibrium to impute phase and missing genotypes in up to whole-genome sequence density genotypic data.

Meuwissen T, Goddard M.

Genetics. 2010 Aug;185(4):1441-9. doi: 10.1534/genetics.110.113936. Epub 2010 May 17.

PMID:
20479147
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Inference of relationships in population data using identity-by-descent and identity-by-state.

Stevens EL, Heckenberg G, Roberson ED, Baugher JD, Downey TJ, Pevsner J.

PLoS Genet. 2011 Sep;7(9):e1002287. doi: 10.1371/journal.pgen.1002287. Epub 2011 Sep 22.

PMID:
21966277
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Inference of haplotypic phase and missing genotypes in polyploid organisms and variable copy number genomic regions.

Su SY, White J, Balding DJ, Coin LJ.

BMC Bioinformatics. 2008 Dec 1;9:513. doi: 10.1186/1471-2105-9-513.

PMID:
19046436
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Improved whole-chromosome phasing for disease and population genetic studies.

Delaneau O, Zagury JF, Marchini J.

Nat Methods. 2013 Jan;10(1):5-6. doi: 10.1038/nmeth.2307. No abstract available.

PMID:
23269371
[PubMed - indexed for MEDLINE]
17.

The Clark phaseable sample size problem: long-range phasing and loss of heterozygosity in GWAS.

Halldórsson BV, Aguiar D, Tarpine R, Istrail S.

J Comput Biol. 2011 Mar;18(3):323-33. doi: 10.1089/cmb.2010.0288.

PMID:
21385037
[PubMed - indexed for MEDLINE]
18.

Joint inference of identity by descent along multiple chromosomes from population samples.

Zheng C, Kuhner MK, Thompson EA.

J Comput Biol. 2014 Mar;21(3):185-200. doi: 10.1089/cmb.2013.0140.

PMID:
24606562
[PubMed - indexed for MEDLINE]
19.

DASH: a method for identical-by-descent haplotype mapping uncovers association with recent variation.

Gusev A, Kenny EE, Lowe JK, Salit J, Saxena R, Kathiresan S, Altshuler DM, Friedman JM, Breslow JL, Pe'er I.

Am J Hum Genet. 2011 Jun 10;88(6):706-17. doi: 10.1016/j.ajhg.2011.04.023. Epub 2011 May 27.

PMID:
21620352
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Calculation of IBD probabilities with dense SNP or sequence data.

Keith JM, McRae A, Duffy D, Mengersen K, Visscher PM.

Genet Epidemiol. 2008 Sep;32(6):513-9. doi: 10.1002/gepi.20324.

PMID:
18357613
[PubMed - indexed for MEDLINE]

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