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Results: 1 to 20 of 156

Similar articles for PubMed (Select 21938629)

1.

Detecting long-range chromatin interactions using the chromosome conformation capture sequencing (4C-seq) method.

Gheldof N, Leleu M, Noordermeer D, Rougemont J, Reymond A.

Methods Mol Biol. 2012;786:211-25. doi: 10.1007/978-1-61779-292-2_13.

PMID:
21938629
2.

C-ing the Genome: A Compendium of Chromosome Conformation Capture Methods to Study Higher-Order Chromatin Organization.

Barutcu AR, Fritz AJ, Zaidi SK, vanWijnen AJ, Lian JB, Stein JL, Nickerson JA, Imbalzano AN, Stein GS.

J Cell Physiol. 2015 Jun 8. doi: 10.1002/jcp.25062. [Epub ahead of print]

PMID:
26059817
3.

Chromosome Conformation Capture Carbon Copy (5C) in Budding Yeast.

Belton JM, Dekker J.

Cold Spring Harb Protoc. 2015 Jun 1;2015(6):pdb.prot085191. doi: 10.1101/pdb.prot085191.

PMID:
26034306
4.

Randomized ligation control for chromosome conformation capture.

Belton JM, Dekker J.

Cold Spring Harb Protoc. 2015 Jun 1;2015(6):pdb.prot085183. doi: 10.1101/pdb.prot085183.

PMID:
26034305
5.

Chromosome Conformation Capture (3C) in Budding Yeast.

Belton JM, Dekker J.

Cold Spring Harb Protoc. 2015 Jun 1;2015(6):pdb.prot085175. doi: 10.1101/pdb.prot085175.

PMID:
26034304
6.

FourCSeq: analysis of 4C sequencing data.

Klein FA, Pakozdi T, Anders S, Ghavi-Helm Y, Furlong EE, Huber W.

Bioinformatics. 2015 Jun 1. pii: btv335. [Epub ahead of print]

7.

Quantitative Analysis of Intra-chromosomal Contacts: The 3C-qPCR Method.

Ea V, Court F, Forné T.

Methods Mol Biol. 2015 May 30. [Epub ahead of print]

PMID:
26025624
8.

Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C.

Mifsud B, Tavares-Cadete F, Young AN, Sugar R, Schoenfelder S, Ferreira L, Wingett SW, Andrews S, Grey W, Ewels PA, Herman B, Happe S, Higgs A, LeProust E, Follows GA, Fraser P, Luscombe NM, Osborne CS.

Nat Genet. 2015 Jun;47(6):598-606. doi: 10.1038/ng.3286. Epub 2015 May 4.

PMID:
25938943
9.

The role of loops on the order of eukaryotes and prokaryotes.

Hofmann A, Heermann DW.

FEBS Lett. 2015 Apr 23. pii: S0014-5793(15)00259-8. doi: 10.1016/j.febslet.2015.04.021. [Epub ahead of print] Review.

PMID:
25912650
10.

Comparative analysis of T4 DNA ligases and DNA polymerases used in chromosome conformation capture assays.

Schwartz M, Sarusi A, Deitch RT, Tal M, Raz D, Sung MH, Kaplan T, Hakim O.

Biotechniques. 2015 Apr 1;58(4):195-9. doi: 10.2144/000114276. eCollection 2015 Apr.

11.

[Spatial organization of interphase chromosomes and the role of chromatin fiber dynamycs in the positioning of genome elements].

Gushchanskaya ES, Gavrilov AA, Razin SV.

Mol Biol (Mosk). 2014 May-Jun;48(3):386-94. Review. Russian.

PMID:
25831887
12.

Genome-wide snapshot of chromatin regulators and states in Xenopus embryos by ChIP-Seq.

Gentsch GE, Patrushev I, Smith JC.

J Vis Exp. 2015 Feb 26;(96). doi: 10.3791/52535.

13.

Integrating multi-omic features exploiting Chromosome Conformation Capture data.

Merelli I, Tordini F, Drocco M, Aldinucci M, Liò P, Milanesi L.

Front Genet. 2015 Feb 11;6:40. doi: 10.3389/fgene.2015.00040. eCollection 2015.

14.

Inferential modeling of 3D chromatin structure.

Wang S, Xu J, Zeng J.

Nucleic Acids Res. 2015 Apr 30;43(8):e54. doi: 10.1093/nar/gkv100. Epub 2015 Feb 17.

15.

High-resolution 3D DNA FISH using plasmid probes and computational correction of optical aberrations to study chromatin structure at the sub-megabase scale.

Giorgetti L, Piolot T, Heard E.

Methods Mol Biol. 2015;1262:37-53. doi: 10.1007/978-1-4939-2253-6_3.

PMID:
25555574
16.

A statistical model of intra-chromosome contact maps.

Nazarov LI, Tamm MV, Avetisov VA, Nechaev SK.

Soft Matter. 2015 Feb 7;11(5):1019-25. doi: 10.1039/c4sm02519a.

PMID:
25521815
17.

Spatial genome organization: contrasting views from chromosome conformation capture and fluorescence in situ hybridization.

Williamson I, Berlivet S, Eskeland R, Boyle S, Illingworth RS, Paquette D, Dostie J, Bickmore WA.

Genes Dev. 2014 Dec 15;28(24):2778-91. doi: 10.1101/gad.251694.114.

18.

The visualization of large organized chromatin domains enriched in the H3K9me2 mark within a single chromosome in a single cell.

Chen X, Yammine S, Shi C, Tark-Dame M, Göndör A, Ohlsson R.

Epigenetics. 2014 Nov;9(11):1439-45. doi: 10.4161/15592294.2014.971633.

PMID:
25482057
19.

The Hitchhiker's guide to Hi-C analysis: practical guidelines.

Lajoie BR, Dekker J, Kaplan N.

Methods. 2015 Jan 15;72:65-75. doi: 10.1016/j.ymeth.2014.10.031. Epub 2014 Nov 6.

PMID:
25448293
20.

Interpreting 4C-Seq data: how far can we go?

Raviram R, Rocha PP, Bonneau R, Skok JA.

Epigenomics. 2014;6(5):455-7. doi: 10.2217/epi.14.47. No abstract available.

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