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Results: 1 to 20 of 88

Similar articles for PubMed (Select 21912654)

1.

Rational design of temperature-sensitive alleles using computational structure prediction.

Poultney CS, Butterfoss GL, Gutwein MR, Drew K, Gresham D, Gunsalus KC, Shasha DE, Bonneau R.

PLoS One. 2011;6(9):e23947. doi: 10.1371/journal.pone.0023947. Epub 2011 Sep 2.

2.

Neighborhood properties are important determinants of temperature sensitive mutations.

Lockwood S, Krishnamoorthy B, Ye P.

PLoS One. 2011;6(12):e28507. doi: 10.1371/journal.pone.0028507. Epub 2011 Dec 2.

3.

Accurate prediction of stability changes in protein mutants by combining machine learning with structure based computational mutagenesis.

Masso M, Vaisman II.

Bioinformatics. 2008 Sep 15;24(18):2002-9. doi: 10.1093/bioinformatics/btn353. Epub 2008 Jul 16.

4.

Prediction of protein-protein interface sequence diversity using flexible backbone computational protein design.

Humphris EL, Kortemme T.

Structure. 2008 Dec 10;16(12):1777-88. doi: 10.1016/j.str.2008.09.012.

5.

Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home.

Das R, Qian B, Raman S, Vernon R, Thompson J, Bradley P, Khare S, Tyka MD, Bhat D, Chivian D, Kim DE, Sheffler WH, Malmström L, Wollacott AM, Wang C, Andre I, Baker D.

Proteins. 2007;69 Suppl 8:118-28.

PMID:
17894356
7.

A survey of machine learning methods for secondary and supersecondary protein structure prediction.

Ho HK, Zhang L, Ramamohanarao K, Martin S.

Methods Mol Biol. 2013;932:87-106. doi: 10.1007/978-1-62703-065-6_6.

PMID:
22987348
8.
9.

A machine learning information retrieval approach to protein fold recognition.

Cheng J, Baldi P.

Bioinformatics. 2006 Jun 15;22(12):1456-63. Epub 2006 Mar 17.

10.

TSpred: a web server for the rational design of temperature-sensitive mutants.

Tan KP, Khare S, Varadarajan R, Madhusudhan MS.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W277-84. doi: 10.1093/nar/gku319. Epub 2014 Apr 29.

11.

Structural correlates of the temperature sensitive phenotype derived from saturation mutagenesis studies of CcdB.

Bajaj K, Dewan PC, Chakrabarti P, Goswami D, Barua B, Baliga C, Varadarajan R.

Biochemistry. 2008 Dec 9;47(49):12964-73. doi: 10.1021/bi8014345.

PMID:
19006334
12.

Automated tertiary structure prediction with accurate local model quality assessment using the IntFOLD-TS method.

McGuffin LJ, Roche DB.

Proteins. 2011;79 Suppl 10:137-46. doi: 10.1002/prot.23120. Epub 2011 Aug 30.

PMID:
22069035
13.

Design and utility of temperature-sensitive Gal4 mutants for conditional gene expression in Drosophila.

Mondal K, VijayRaghavan K, Varadarajan R.

Fly (Austin). 2007 Sep-Oct;1(5):282-6. Epub 2007 Sep 4.

14.

Computational resources for protein modelling and drug discovery applications.

Dhaliwal B, Chen YW.

Infect Disord Drug Targets. 2009 Nov;9(5):557-62. Review.

PMID:
19594423
15.

Prediction of protein structure class by coupling improved genetic algorithm and support vector machine.

Li ZC, Zhou XB, Lin YR, Zou XY.

Amino Acids. 2008 Oct;35(3):581-90. doi: 10.1007/s00726-008-0084-z. Epub 2008 Apr 22.

PMID:
18427714
16.

Robust prediction of mutation-induced protein stability change by property encoding of amino acids.

Kang S, Chen G, Xiao G.

Protein Eng Des Sel. 2009 Feb;22(2):75-83. doi: 10.1093/protein/gzn063. Epub 2008 Dec 2.

17.

The SAAP pipeline and database: tools to analyze the impact and predict the pathogenicity of mutations.

Al-Numair NS, Martin AC.

BMC Genomics. 2013;14 Suppl 3:S4. doi: 10.1186/1471-2164-14-S3-S4. Epub 2013 May 28.

18.

Physicochemical feature-based classification of amino acid mutations.

Shen B, Bai J, Vihinen M.

Protein Eng Des Sel. 2008 Jan;21(1):37-44. Epub 2007 Dec 19.

19.

Statistical geometry based prediction of nonsynonymous SNP functional effects using random forest and neuro-fuzzy classifiers.

Barenboim M, Masso M, Vaisman II, Jamison DC.

Proteins. 2008 Jun;71(4):1930-9. doi: 10.1002/prot.21838.

PMID:
18186470
20.

Predicting protein thermostability changes from sequence upon multiple mutations.

Montanucci L, Fariselli P, Martelli PL, Casadio R.

Bioinformatics. 2008 Jul 1;24(13):i190-5. doi: 10.1093/bioinformatics/btn166.

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