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Results: 1 to 20 of 89

1.

Design and coverage of high throughput genotyping arrays optimized for individuals of East Asian, African American, and Latino race/ethnicity using imputation and a novel hybrid SNP selection algorithm.

Hoffmann TJ, Zhan Y, Kvale MN, Hesselson SE, Gollub J, Iribarren C, Lu Y, Mei G, Purdy MM, Quesenberry C, Rowell S, Shapero MH, Smethurst D, Somkin CP, Van den Eeden SK, Walter L, Webster T, Whitmer RA, Finn A, Schaefer C, Kwok PY, Risch N.

Genomics. 2011 Dec;98(6):422-30. doi: 10.1016/j.ygeno.2011.08.007. Epub 2011 Aug 28.

PMID:
21903159
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Accuracy of genome-wide imputation of untyped markers and impacts on statistical power for association studies.

Hao K, Chudin E, McElwee J, Schadt EE.

BMC Genet. 2009 Jun 16;10:27. doi: 10.1186/1471-2156-10-27.

PMID:
19531258
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Next generation genome-wide association tool: design and coverage of a high-throughput European-optimized SNP array.

Hoffmann TJ, Kvale MN, Hesselson SE, Zhan Y, Aquino C, Cao Y, Cawley S, Chung E, Connell S, Eshragh J, Ewing M, Gollub J, Henderson M, Hubbell E, Iribarren C, Kaufman J, Lao RZ, Lu Y, Ludwig D, Mathauda GK, McGuire W, Mei G, Miles S, Purdy MM, Quesenberry C, Ranatunga D, Rowell S, Sadler M, Shapero MH, Shen L, Shenoy TR, Smethurst D, Van den Eeden SK, Walter L, Wan E, Wearley R, Webster T, Wen CC, Weng L, Whitmer RA, Williams A, Wong SC, Zau C, Finn A, Schaefer C, Kwok PY, Risch N.

Genomics. 2011 Aug;98(2):79-89. doi: 10.1016/j.ygeno.2011.04.005. Epub 2011 Apr 30.

PMID:
21565264
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Imputation across genotyping arrays for genome-wide association studies: assessment of bias and a correction strategy.

Johnson EO, Hancock DB, Levy JL, Gaddis NC, Saccone NL, Bierut LJ, Page GP.

Hum Genet. 2013 May;132(5):509-22. doi: 10.1007/s00439-013-1266-7. Epub 2013 Jan 22.

PMID:
23334152
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Genetic ancestry, self-reported race and ethnicity in African Americans and European Americans in the PCaP cohort.

Sucheston LE, Bensen JT, Xu Z, Singh PK, Preus L, Mohler JL, Su LJ, Fontham ET, Ruiz B, Smith GJ, Taylor JA.

PLoS One. 2012;7(3):e30950. doi: 10.1371/journal.pone.0030950. Epub 2012 Mar 27.

PMID:
22479307
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Genome-wide association studies of the PR interval in African Americans.

Smith JG, Magnani JW, Palmer C, Meng YA, Soliman EZ, Musani SK, Kerr KF, Schnabel RB, Lubitz SA, Sotoodehnia N, Redline S, Pfeufer A, Müller M, Evans DS, Nalls MA, Liu Y, Newman AB, Zonderman AB, Evans MK, Deo R, Ellinor PT, Paltoo DN, Newton-Cheh C, Benjamin EJ, Mehra R, Alonso A, Heckbert SR, Fox ER; Candidate-gene Association Resource (CARe) Consortium.

PLoS Genet. 2011 Feb 10;7(2):e1001304. doi: 10.1371/journal.pgen.1001304.

PMID:
21347284
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Meta-analysis of Dense Genecentric Association Studies Reveals Common and Uncommon Variants Associated with Height.

Lanktree MB, Guo Y, Murtaza M, Glessner JT, Bailey SD, Onland-Moret NC, Lettre G, Ongen H, Rajagopalan R, Johnson T, Shen H, Nelson CP, Klopp N, Baumert J, Padmanabhan S, Pankratz N, Pankow JS, Shah S, Taylor K, Barnard J, Peters BJ, Maloney CM, Lobmeyer MT, Stanton A, Zafarmand MH, Romaine SP, Mehta A, van Iperen EP, Gong Y, Price TS, Smith EN, Kim CE, Li YR, Asselbergs FW, Atwood LD, Bailey KM, Bhatt D, Bauer F, Behr ER, Bhangale T, Boer JM, Boehm BO, Bradfield JP, Brown M, Braund PS, Burton PR, Carty C, Chandrupatla HR, Chen W, Connell J, Dalgeorgou C, Boer Ad, Drenos F, Elbers CC, Fang JC, Fox CS, Frackelton EC, Fuchs B, Furlong CE, Gibson Q, Gieger C, Goel A, Grobbee DE, Hastie C, Howard PJ, Huang GH, Johnson WC, Li Q, Kleber ME, Klein BE, Klein R, Kooperberg C, Ky B, Lacroix A, Lanken P, Lathrop M, Li M, Marshall V, Melander O, Mentch FD, Meyer NJ, Monda KL, Montpetit A, Murugesan G, Nakayama K, Nondahl D, Onipinla A, Rafelt S, Newhouse SJ, Otieno FG, Patel SR, Putt ME, Rodriguez S, Safa RN, Sawyer DB, Schreiner PJ, Simpson C, Sivapalaratnam S, Srinivasan SR, Suver C, Swergold G, Sweitzer NK, Thomas KA, Thorand B, Timpson NJ, Tischfield S, Tobin M, Tomaszewski M, Verschuren WM, Wallace C, Winkelmann B, Zhang H, Zheng D, Zhang L, Zmuda JM, Clarke R, Balmforth AJ, Danesh J, Day IN, Schork NJ, de Bakker PI, Delles C, Duggan D, Hingorani AD, Hirschhorn JN, Hofker MH, Humphries SE, Kivimaki M, Lawlor DA, Kottke-Marchant K, Mega JL, Mitchell BD, Morrow DA, Palmen J, Redline S, Shields DC, Shuldiner AR, Sleiman PM, Smith GD, Farrall M, Jamshidi Y, Christiani DC, Casas JP, Hall AS, Doevendans PA, Christie JD, Berenson GS, Murray SS, Illig T, Dorn GW 2nd, Cappola TP, Boerwinkle E, Sever P, Rader DJ, Reilly MP, Caulfield M, Talmud PJ, Topol E, Engert JC, Wang K, Dominiczak A, Hamsten A, Curtis SP, Silverstein RL, Lange LA, Sabatine MS, Trip M, Saleheen D, Peden JF, Cruickshanks KJ, März W, O'Connell JR, Klungel OH, Wijmenga C, Maitland-van der Zee AH, Schadt EE, Johnson JA, Jarvik GP, Papanicolaou GJ; Hugh Watkins on behalf of PROCARDIS, Grant SF, Munroe PB, North KE, Samani NJ, Koenig W, Gaunt TR, Anand SS, van der Schouw YT; Meena Kumari on behalf of the Whitehall II Study and the WHII 50K Group, Soranzo N, Fitzgerald GA, Reiner A, Hegele RA, Hakonarson H, Keating BJ.

Am J Hum Genet. 2011 Jan 7;88(1):6-18. doi: 10.1016/j.ajhg.2010.11.007. Epub 2010 Dec 30. Erratum in: Am J Hum Genet. 2012 Jun 8;90(6):1117. Tomaszweski, Maciej [corrected to Tomaszewski, Maciej].

PMID:
21194676
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Comprehensive evaluation of imputation performance in African Americans.

Chanda P, Yuhki N, Li M, Bader JS, Hartz A, Boerwinkle E, Kao WH, Arking DE.

J Hum Genet. 2012 Jul;57(7):411-21. doi: 10.1038/jhg.2012.43. Epub 2012 May 31.

PMID:
22648186
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Analysis of East Asia genetic substructure using genome-wide SNP arrays.

Tian C, Kosoy R, Lee A, Ransom M, Belmont JW, Gregersen PK, Seldin MF.

PLoS One. 2008;3(12):e3862. doi: 10.1371/journal.pone.0003862. Epub 2008 Dec 5.

PMID:
19057645
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Efficiency and power as a function of sequence coverage, SNP array density, and imputation.

Flannick J, Korn JM, Fontanillas P, Grant GB, Banks E, Depristo MA, Altshuler D.

PLoS Comput Biol. 2012;8(7):e1002604. doi: 10.1371/journal.pcbi.1002604. Epub 2012 Jul 12.

PMID:
22807667
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Gene-centric meta-analysis of lipid traits in African, East Asian and Hispanic populations.

Elbers CC, Guo Y, Tragante V, van Iperen EP, Lanktree MB, Castillo BA, Chen F, Yanek LR, Wojczynski MK, Li YR, Ferwerda B, Ballantyne CM, Buxbaum SG, Chen YD, Chen WM, Cupples LA, Cushman M, Duan Y, Duggan D, Evans MK, Fernandes JK, Fornage M, Garcia M, Garvey WT, Glazer N, Gomez F, Harris TB, Halder I, Howard VJ, Keller MF, Kamboh MI, Kooperberg C, Kritchevsky SB, LaCroix A, Liu K, Liu Y, Musunuru K, Newman AB, Onland-Moret NC, Ordovas J, Peter I, Post W, Redline S, Reis SE, Saxena R, Schreiner PJ, Volcik KA, Wang X, Yusuf S, Zonderland AB, Anand SS, Becker DM, Psaty B, Rader DJ, Reiner AP, Rich SS, Rotter JI, Sale MM, Tsai MY, Borecki IB, Hegele RA, Kathiresan S, Nalls MA, Taylor HA Jr, Hakonarson H, Sivapalaratnam S, Asselbergs FW, Drenos F, Wilson JG, Keating BJ.

PLoS One. 2012;7(12):e50198. doi: 10.1371/journal.pone.0050198. Epub 2012 Dec 7.

PMID:
23236364
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Efficient selection of tagging single-nucleotide polymorphisms in multiple populations.

Howie BN, Carlson CS, Rieder MJ, Nickerson DA.

Hum Genet. 2006 Aug;120(1):58-68. Epub 2006 May 6.

PMID:
16680432
[PubMed - indexed for MEDLINE]
13.

Genotype-imputation accuracy across worldwide human populations.

Huang L, Li Y, Singleton AB, Hardy JA, Abecasis G, Rosenberg NA, Scheet P.

Am J Hum Genet. 2009 Feb;84(2):235-50. doi: 10.1016/j.ajhg.2009.01.013.

PMID:
19215730
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Design of tag SNP whole genome genotyping arrays.

Peiffer DA, Gunderson KL.

Methods Mol Biol. 2009;529:51-61. doi: 10.1007/978-1-59745-538-1_4.

PMID:
19381970
[PubMed - indexed for MEDLINE]
15.

The impact of SNP density on fine-scale patterns of linkage disequilibrium.

Ke X, Hunt S, Tapper W, Lawrence R, Stavrides G, Ghori J, Whittaker P, Collins A, Morris AP, Bentley D, Cardon LR, Deloukas P.

Hum Mol Genet. 2004 Mar 15;13(6):577-88. Epub 2004 Jan 20.

PMID:
14734624
[PubMed - indexed for MEDLINE]
Free Article
16.

Imputation-based genomic coverage assessments of current human genotyping arrays.

Nelson SC, Doheny KF, Pugh EW, Romm JM, Ling H, Laurie CA, Browning SR, Weir BS, Laurie CC.

G3 (Bethesda). 2013 Oct 3;3(10):1795-807. doi: 10.1534/g3.113.007161.

PMID:
23979933
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

A genome-wide association study of serum uric acid in African Americans.

Charles BA, Shriner D, Doumatey A, Chen G, Zhou J, Huang H, Herbert A, Gerry NP, Christman MF, Adeyemo A, Rotimi CN.

BMC Med Genomics. 2011 Feb 4;4:17. doi: 10.1186/1755-8794-4-17.

PMID:
21294900
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

A genomewide admixture mapping panel for Hispanic/Latino populations.

Mao X, Bigham AW, Mei R, Gutierrez G, Weiss KM, Brutsaert TD, Leon-Velarde F, Moore LG, Vargas E, McKeigue PM, Shriver MD, Parra EJ.

Am J Hum Genet. 2007 Jun;80(6):1171-8. Epub 2007 Apr 20.

PMID:
17503334
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Ancestry informative marker panels for African Americans based on subsets of commercially available SNP arrays.

Tandon A, Patterson N, Reich D.

Genet Epidemiol. 2011 Jan;35(1):80-3. doi: 10.1002/gepi.20550.

PMID:
21181899
[PubMed - indexed for MEDLINE]
20.

Evaluating the performance of Affymetrix SNP Array 6.0 platform with 400 Japanese individuals.

Nishida N, Koike A, Tajima A, Ogasawara Y, Ishibashi Y, Uehara Y, Inoue I, Tokunaga K.

BMC Genomics. 2008 Sep 22;9:431. doi: 10.1186/1471-2164-9-431.

PMID:
18803882
[PubMed - indexed for MEDLINE]
Free PMC Article
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