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Results: 1 to 20 of 99

1.

A transcriptomic atlas of mouse neocortical layers.

Belgard TG, Marques AC, Oliver PL, Abaan HO, Sirey TM, Hoerder-Suabedissen A, García-Moreno F, Molnár Z, Margulies EH, Ponting CP.

Neuron. 2011 Aug 25;71(4):605-16. doi: 10.1016/j.neuron.2011.06.039.

PMID:
21867878
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Transcripts with in silico predicted RNA structure are enriched everywhere in the mouse brain.

Seemann SE, Sunkin SM, Hawrylycz MJ, Ruzzo WL, Gorodkin J.

BMC Genomics. 2012 May 31;13:214. doi: 10.1186/1471-2164-13-214.

PMID:
22651826
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

GATExplorer: genomic and transcriptomic explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs.

Risueño A, Fontanillo C, Dinger ME, De Las Rivas J.

BMC Bioinformatics. 2010 Apr 29;11:221. doi: 10.1186/1471-2105-11-221.

PMID:
20429936
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Allen Brain Atlas: an integrated spatio-temporal portal for exploring the central nervous system.

Sunkin SM, Ng L, Lau C, Dolbeare T, Gilbert TL, Thompson CL, Hawrylycz M, Dang C.

Nucleic Acids Res. 2013 Jan;41(Database issue):D996-D1008. doi: 10.1093/nar/gks1042. Epub 2012 Nov 28.

PMID:
23193282
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

The Allen Human Brain Atlas: comprehensive gene expression mapping of the human brain.

Shen EH, Overly CC, Jones AR.

Trends Neurosci. 2012 Dec;35(12):711-4. doi: 10.1016/j.tins.2012.09.005. Epub 2012 Oct 5.

PMID:
23041053
[PubMed - indexed for MEDLINE]
6.

An anatomically comprehensive atlas of the adult human brain transcriptome.

Hawrylycz MJ, Lein ES, Guillozet-Bongaarts AL, Shen EH, Ng L, Miller JA, van de Lagemaat LN, Smith KA, Ebbert A, Riley ZL, Abajian C, Beckmann CF, Bernard A, Bertagnolli D, Boe AF, Cartagena PM, Chakravarty MM, Chapin M, Chong J, Dalley RA, Daly BD, Dang C, Datta S, Dee N, Dolbeare TA, Faber V, Feng D, Fowler DR, Goldy J, Gregor BW, Haradon Z, Haynor DR, Hohmann JG, Horvath S, Howard RE, Jeromin A, Jochim JM, Kinnunen M, Lau C, Lazarz ET, Lee C, Lemon TA, Li L, Li Y, Morris JA, Overly CC, Parker PD, Parry SE, Reding M, Royall JJ, Schulkin J, Sequeira PA, Slaughterbeck CR, Smith SC, Sodt AJ, Sunkin SM, Swanson BE, Vawter MP, Williams D, Wohnoutka P, Zielke HR, Geschwind DH, Hof PR, Smith SM, Koch C, Grant SG, Jones AR.

Nature. 2012 Sep 20;489(7416):391-9. doi: 10.1038/nature11405.

PMID:
22996553
[PubMed - indexed for MEDLINE]
7.

Specific expression of long noncoding RNAs in the mouse brain.

Mercer TR, Dinger ME, Sunkin SM, Mehler MF, Mattick JS.

Proc Natl Acad Sci U S A. 2008 Jan 15;105(2):716-21. doi: 10.1073/pnas.0706729105. Epub 2008 Jan 9.

PMID:
18184812
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Patterned expression of ion channel genes in mouse dorsal raphe nucleus determined with the Allen Mouse Brain Atlas.

Templin JS, Bang SJ, Soiza-Reilly M, Berde CB, Commons KG.

Brain Res. 2012 May 31;1457:1-12. doi: 10.1016/j.brainres.2012.03.066. Epub 2012 Apr 4.

PMID:
22534482
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Long noncoding intronic RNAs are differentially expressed in primary and metastatic pancreatic cancer.

Tahira AC, Kubrusly MS, Faria MF, Dazzani B, Fonseca RS, Maracaja-Coutinho V, Verjovski-Almeida S, Machado MC, Reis EM.

Mol Cancer. 2011 Nov 13;10:141. doi: 10.1186/1476-4598-10-141.

PMID:
22078386
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Molecular networks involved in mouse cerebral corticogenesis and spatio-temporal regulation of Sox4 and Sox11 novel antisense transcripts revealed by transcriptome profiling.

Ling KH, Hewitt CA, Beissbarth T, Hyde L, Banerjee K, Cheah PS, Cannon PZ, Hahn CN, Thomas PQ, Smyth GK, Tan SS, Thomas T, Scott HS.

Genome Biol. 2009;10(10):R104. doi: 10.1186/gb-2009-10-10-r104. Epub 2009 Oct 2.

PMID:
19799774
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Areal and laminar differentiation in the mouse neocortex using large scale gene expression data.

Hawrylycz M, Bernard A, Lau C, Sunkin SM, Chakravarty MM, Lein ES, Jones AR, Ng L.

Methods. 2010 Feb;50(2):113-21. doi: 10.1016/j.ymeth.2009.09.005. Epub 2009 Sep 30.

PMID:
19800006
[PubMed - indexed for MEDLINE]
12.

A high-resolution anatomical atlas of the transcriptome in the mouse embryo.

Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, Magen A, Canidio E, Pagani M, Peluso I, Lin-Marq N, Koch M, Bilio M, Cantiello I, Verde R, De Masi C, Bianchi SA, Cicchini J, Perroud E, Mehmeti S, Dagand E, Schrinner S, Nürnberger A, Schmidt K, Metz K, Zwingmann C, Brieske N, Springer C, Hernandez AM, Herzog S, Grabbe F, Sieverding C, Fischer B, Schrader K, Brockmeyer M, Dettmer S, Helbig C, Alunni V, Battaini MA, Mura C, Henrichsen CN, Garcia-Lopez R, Echevarria D, Puelles E, Garcia-Calero E, Kruse S, Uhr M, Kauck C, Feng G, Milyaev N, Ong CK, Kumar L, Lam M, Semple CA, Gyenesei A, Mundlos S, Radelof U, Lehrach H, Sarmientos P, Reymond A, Davidson DR, Dollé P, Antonarakis SE, Yaspo ML, Martinez S, Baldock RA, Eichele G, Ballabio A.

PLoS Biol. 2011 Jan 18;9(1):e1000582. doi: 10.1371/journal.pbio.1000582.

PMID:
21267068
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

High-resolution gene expression atlases for adult and developing mouse brain and spinal cord.

Henry AM, Hohmann JG.

Mamm Genome. 2012 Oct;23(9-10):539-49. doi: 10.1007/s00335-012-9406-2. Epub 2012 Jul 26. Review.

PMID:
22832508
[PubMed - indexed for MEDLINE]
14.

Analysis of chaperone mRNA expression in the adult mouse brain by meta analysis of the Allen Brain Atlas.

Tebbenkamp AT, Borchelt DR.

PLoS One. 2010 Oct 28;5(10):e13675. doi: 10.1371/journal.pone.0013675.

PMID:
21060842
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Genome-wide analysis of long noncoding RNA stability.

Clark MB, Johnston RL, Inostroza-Ponta M, Fox AH, Fortini E, Moscato P, Dinger ME, Mattick JS.

Genome Res. 2012 May;22(5):885-98. doi: 10.1101/gr.131037.111. Epub 2012 Mar 9.

PMID:
22406755
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation.

Dinger ME, Amaral PP, Mercer TR, Pang KC, Bruce SJ, Gardiner BB, Askarian-Amiri ME, Ru K, Soldà G, Simons C, Sunkin SM, Crowe ML, Grimmond SM, Perkins AC, Mattick JS.

Genome Res. 2008 Sep;18(9):1433-45. doi: 10.1101/gr.078378.108. Epub 2008 Jun 18.

PMID:
18562676
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Transcriptional landscape of the prenatal human brain.

Miller JA, Ding SL, Sunkin SM, Smith KA, Ng L, Szafer A, Ebbert A, Riley ZL, Royall JJ, Aiona K, Arnold JM, Bennet C, Bertagnolli D, Brouner K, Butler S, Caldejon S, Carey A, Cuhaciyan C, Dalley RA, Dee N, Dolbeare TA, Facer BA, Feng D, Fliss TP, Gee G, Goldy J, Gourley L, Gregor BW, Gu G, Howard RE, Jochim JM, Kuan CL, Lau C, Lee CK, Lee F, Lemon TA, Lesnar P, McMurray B, Mastan N, Mosqueda N, Naluai-Cecchini T, Ngo NK, Nyhus J, Oldre A, Olson E, Parente J, Parker PD, Parry SE, Stevens A, Pletikos M, Reding M, Roll K, Sandman D, Sarreal M, Shapouri S, Shapovalova NV, Shen EH, Sjoquist N, Slaughterbeck CR, Smith M, Sodt AJ, Williams D, Zöllei L, Fischl B, Gerstein MB, Geschwind DH, Glass IA, Hawrylycz MJ, Hevner RF, Huang H, Jones AR, Knowles JA, Levitt P, Phillips JW, Sestan N, Wohnoutka P, Dang C, Bernard A, Hohmann JG, Lein ES.

Nature. 2014 Apr 10;508(7495):199-206. doi: 10.1038/nature13185. Epub 2014 Apr 2.

PMID:
24695229
[PubMed - indexed for MEDLINE]
18.

Refining transcriptional programs in kidney development by integration of deep RNA-sequencing and array-based spatial profiling.

Thiagarajan RD, Cloonan N, Gardiner BB, Mercer TR, Kolle G, Nourbakhsh E, Wani S, Tang D, Krishnan K, Georgas KM, Rumballe BA, Chiu HS, Steen JA, Mattick JS, Little MH, Grimmond SM.

BMC Genomics. 2011 Sep 5;12:441. doi: 10.1186/1471-2164-12-441.

PMID:
21888672
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

A segmentation protocol and MRI atlas of the C57BL/6J mouse neocortex.

Ullmann JF, Watson C, Janke AL, Kurniawan ND, Reutens DC.

Neuroimage. 2013 Sep;78:196-203. doi: 10.1016/j.neuroimage.2013.04.008. Epub 2013 Apr 12.

PMID:
23587687
[PubMed - indexed for MEDLINE]
20.

A tool for identification of genes expressed in patterns of interest using the Allen Brain Atlas.

Davis FP, Eddy SR.

Bioinformatics. 2009 Jul 1;25(13):1647-54. doi: 10.1093/bioinformatics/btp288. Epub 2009 May 4.

PMID:
19414530
[PubMed - indexed for MEDLINE]
Free PMC Article

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