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Similar articles for PubMed (Select 21864792)

1.

Performance assessment of different constraining potentials in computational structure prediction for disulfide-bridged proteins.

Kondov I, Verma A, Wenzel W.

Comput Biol Chem. 2011 Aug 10;35(4):230-9. doi: 10.1016/j.compbiolchem.2011.04.012. Epub 2011 May 27.

PMID:
21864792
2.

Refolding of potato carboxypeptidase inhibitor by molecular dynamics simulations with disulfide bond constraints.

Martí-Renom MA, Stote RH, Querol E, Avilés FX, Karplus M.

J Mol Biol. 1998 Nov 20;284(1):145-72.

PMID:
9811548
3.
4.

Folding path and funnel scenarios for two small disulfide-bridged proteins.

Kondov I, Verma A, Wenzel W.

Biochemistry. 2009 Sep 1;48(34):8195-205. doi: 10.1021/bi900702m.

PMID:
19610617
5.

Predicting disulfide connectivity from protein sequence using multiple sequence feature vectors and secondary structure.

Song J, Yuan Z, Tan H, Huber T, Burrage K.

Bioinformatics. 2007 Dec 1;23(23):3147-54. Epub 2007 Oct 17.

6.

High torsional energy disulfides: relationship between cross-strand disulfides and right-handed staples.

Haworth NL, Feng LL, Wouters MA.

J Bioinform Comput Biol. 2006 Feb;4(1):155-68.

PMID:
16568548
8.
9.

ProVal: a protein-scoring function for the selection of native and near-native folds.

Berglund A, Head RD, Welsh EA, Marshall GR.

Proteins. 2004 Feb 1;54(2):289-302.

PMID:
14696191
10.

Protein structure evaluation using an all-atom energy based empirical scoring function.

Narang P, Bhushan K, Bose S, Jayaram B.

J Biomol Struct Dyn. 2006 Feb;23(4):385-406.

PMID:
16363875
11.

Study of a major intermediate in the oxidative folding of leech carboxypeptidase inhibitor: contribution of the fourth disulfide bond.

Arolas JL, Popowicz GM, Bronsoms S, Aviles FX, Huber R, Holak TA, Ventura S.

J Mol Biol. 2005 Sep 30;352(4):961-75.

PMID:
16126224
13.

Bioinformatics approaches for disulfide connectivity prediction.

Tsai CH, Chan CH, Chen BJ, Kao CY, Liu HL, Hsu JP.

Curr Protein Pept Sci. 2007 Jun;8(3):243-60. Review.

PMID:
17584119
14.

Distance dependent centroid to centroid force fields using high resolution decoys.

Rajgaria R, McAllister SR, Floudas CA.

Proteins. 2008 Feb 15;70(3):950-70.

PMID:
17847088
15.

Ab initio protein structure prediction with force field parameters derived from water-phase quantum chemical calculation.

Katagiri D, Fuji H, Neya S, Hoshino T.

J Comput Chem. 2008 Sep;29(12):1930-44. doi: 10.1002/jcc.20963.

PMID:
18366016
16.

Designing out disulfide bonds of leech carboxypeptidase inhibitor: implications for its folding, stability and function.

Arolas JL, Castillo V, Bronsoms S, Aviles FX, Ventura S.

J Mol Biol. 2009 Sep 18;392(2):529-46. doi: 10.1016/j.jmb.2009.06.049. Epub 2009 Jun 25.

PMID:
19559710
17.

Prediction of disulfide connectivity in proteins.

Fariselli P, Casadio R.

Bioinformatics. 2001 Oct;17(10):957-64.

18.

Cysteine separations profiles on protein sequences infer disulfide connectivity.

Zhao E, Liu HL, Tsai CH, Tsai HK, Chan CH, Kao CY.

Bioinformatics. 2005 Apr 15;21(8):1415-20. Epub 2004 Dec 7.

19.

Elucidation of the disulfide-folding pathway of hirudin by a topology-based approach.

Micheletti C, De Filippis V, Maritan A, Seno F.

Proteins. 2003 Nov 15;53(3):720-30.

PMID:
14579362
20.

Unfolding and refolding of the native structure of bovine pancreatic trypsin inhibitor studied by computer simulations.

Hao MH, Pincus MR, Rackovsky S, Scheraga HA.

Biochemistry. 1993 Sep 21;32(37):9614-31.

PMID:
7690589
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