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Items: 1 to 20 of 102

1.

Competitive genomic screens of barcoded yeast libraries.

Smith AM, Durbic T, Oh J, Urbanus M, Proctor M, Heisler LE, Giaever G, Nislow C.

J Vis Exp. 2011 Aug 11;(54). pii: 2864. doi: 10.3791/2864.

2.

Genome-wide analysis of barcoded Saccharomyces cerevisiae gene-deletion mutants in pooled cultures.

Pierce SE, Davis RW, Nislow C, Giaever G.

Nat Protoc. 2007;2(11):2958-74.

PMID:
18007632
3.

Signature-tagged mutagenesis to characterize genes through competitive selection of bar-coded genome libraries.

Oh J, Nislow C.

Methods Mol Biol. 2011;765:225-52. doi: 10.1007/978-1-61779-197-0_14.

PMID:
21815096
4.

Chemogenomic approaches to elucidation of gene function and genetic pathways.

Pierce SE, Davis RW, Nislow C, Giaever G.

Methods Mol Biol. 2009;548:115-43. doi: 10.1007/978-1-59745-540-4_7.

PMID:
19521822
5.

Quantitative phenotyping via deep barcode sequencing.

Smith AM, Heisler LE, Mellor J, Kaper F, Thompson MJ, Chee M, Roth FP, Giaever G, Nislow C.

Genome Res. 2009 Oct;19(10):1836-42. doi: 10.1101/gr.093955.109. Epub 2009 Jul 21.

6.

High-throughput creation of a whole-genome collection of yeast knockout strains.

Chu AM, Davis RW.

Methods Mol Biol. 2008;416:205-20. doi: 10.1007/978-1-59745-321-9_14.

PMID:
18392970
7.

Functional analysis with a barcoder yeast gene overexpression system.

Douglas AC, Smith AM, Sharifpoor S, Yan Z, Durbic T, Heisler LE, Lee AY, Ryan O, Göttert H, Surendra A, van Dyk D, Giaever G, Boone C, Nislow C, Andrews BJ.

G3 (Bethesda). 2012 Oct;2(10):1279-89. doi: 10.1534/g3.112.003400. Epub 2012 Oct 1.

8.

Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing.

Lefrançois P, Euskirchen GM, Auerbach RK, Rozowsky J, Gibson T, Yellman CM, Gerstein M, Snyder M.

BMC Genomics. 2009 Jan 21;10:37. doi: 10.1186/1471-2164-10-37.

9.

A comparative analysis of DNA barcode microarray feature size.

Ammar R, Smith AM, Heisler LE, Giaever G, Nislow C.

BMC Genomics. 2009 Oct 13;10:471. doi: 10.1186/1471-2164-10-471.

10.

Next-generation DNA barcoding: using next-generation sequencing to enhance and accelerate DNA barcode capture from single specimens.

Shokralla S, Gibson JF, Nikbakht H, Janzen DH, Hallwachs W, Hajibabaei M.

Mol Ecol Resour. 2014 Sep;14(5):892-901. doi: 10.1111/1755-0998.12236. Epub 2014 Feb 19.

11.

Multiplexed array-based and in-solution genomic enrichment for flexible and cost-effective targeted next-generation sequencing.

Harakalova M, Mokry M, Hrdlickova B, Renkens I, Duran K, van Roekel H, Lansu N, van Roosmalen M, de Bruijn E, Nijman IJ, Kloosterman WP, Cuppen E.

Nat Protoc. 2011 Nov 3;6(12):1870-86. doi: 10.1038/nprot.2011.396.

PMID:
22051800
12.

Generating barcoded libraries for multiplex high-throughput sequencing.

Knapp M, Stiller M, Meyer M.

Methods Mol Biol. 2012;840:155-70. doi: 10.1007/978-1-61779-516-9_19.

PMID:
22237533
13.

Barcode sequencing for understanding drug-gene interactions.

Smith AM, Durbic T, Kittanakom S, Giaever G, Nislow C.

Methods Mol Biol. 2012;910:55-69. doi: 10.1007/978-1-61779-965-5_4.

PMID:
22821592
14.

TagGD: fast and accurate software for DNA Tag generation and demultiplexing.

Costea PI, Lundeberg J, Akan P.

PLoS One. 2013;8(3):e57521. doi: 10.1371/journal.pone.0057521. Epub 2013 Mar 4.

15.

A universal TagModule collection for parallel genetic analysis of microorganisms.

Oh J, Fung E, Price MN, Dehal PS, Davis RW, Giaever G, Nislow C, Arkin AP, Deutschbauer A.

Nucleic Acids Res. 2010 Aug;38(14):e146. doi: 10.1093/nar/gkq419. Epub 2010 May 21.

16.

An antisense-based functional genomics approach for identification of genes critical for growth of Candida albicans.

De Backer MD, Nelissen B, Logghe M, Viaene J, Loonen I, Vandoninck S, de Hoogt R, Dewaele S, Simons FA, Verhasselt P, Vanhoof G, Contreras R, Luyten WH.

Nat Biotechnol. 2001 Mar;19(3):235-41. Erratum in: Nat Biotechnol 2001 Jul;19(7):681.

PMID:
11231556
17.

Identification of Links Between Cellular Pathways by Genetic Interaction Mapping (GIM).

Malabat C, Saveanu C.

Methods Mol Biol. 2016;1361:325-43. doi: 10.1007/978-1-4939-3079-1_18.

PMID:
26483030
18.

Improved statistical analysis of budding yeast TAG microarrays revealed by defined spike-in pools.

Peyser BD, Irizarry RA, Tiffany CW, Chen O, Yuan DS, Boeke JD, Spencer FA.

Nucleic Acids Res. 2005 Sep 15;33(16):e140.

19.

Genome-wide high-throughput screens in functional genomics.

Friedman A, Perrimon N.

Curr Opin Genet Dev. 2004 Oct;14(5):470-6. Review.

PMID:
15380236
20.

Large-scale essential gene identification in Candida albicans and applications to antifungal drug discovery.

Roemer T, Jiang B, Davison J, Ketela T, Veillette K, Breton A, Tandia F, Linteau A, Sillaots S, Marta C, Martel N, Veronneau S, Lemieux S, Kauffman S, Becker J, Storms R, Boone C, Bussey H.

Mol Microbiol. 2003 Oct;50(1):167-81.

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