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Items: 1 to 20 of 281

1.

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons.

Alikhan NF, Petty NK, Ben Zakour NL, Beatson SA.

BMC Genomics. 2011 Aug 8;12:402. doi: 10.1186/1471-2164-12-402.

2.

Comparing thousands of circular genomes using the CGView Comparison Tool.

Grant JR, Arantes AS, Stothard P.

BMC Genomics. 2012 May 23;13:202. doi: 10.1186/1471-2164-13-202.

3.

Easyfig: a genome comparison visualizer.

Sullivan MJ, Petty NK, Beatson SA.

Bioinformatics. 2011 Apr 1;27(7):1009-10. doi: 10.1093/bioinformatics/btr039. Epub 2011 Jan 28.

4.

Next generation tools for genomic data generation, distribution, and visualization.

Nix DA, Di Sera TL, Dalley BK, Milash BA, Cundick RM, Quinn KS, Courdy SJ.

BMC Bioinformatics. 2010 Sep 9;11:455. doi: 10.1186/1471-2105-11-455.

5.

Genomic BLAST: custom-defined virtual databases for complete and unfinished genomes.

Cummings L, Riley L, Black L, Souvorov A, Resenchuk S, Dondoshansky I, Tatusova T.

FEMS Microbiol Lett. 2002 Nov 5;216(2):133-8.

6.

PROMPT: a protein mapping and comparison tool.

Schmidt T, Frishman D.

BMC Bioinformatics. 2006 Jul 4;7:331.

8.

ITEP: an integrated toolkit for exploration of microbial pan-genomes.

Benedict MN, Henriksen JR, Metcalf WW, Whitaker RJ, Price ND.

BMC Genomics. 2014 Jan 3;15:8. doi: 10.1186/1471-2164-15-8.

9.

MBGD: a platform for microbial comparative genomics based on the automated construction of orthologous groups.

Uchiyama I.

Nucleic Acids Res. 2007 Jan;35(Database issue):D343-6. Epub 2006 Nov 29.

10.

SynTView - an interactive multi-view genome browser for next-generation comparative microorganism genomics.

Lechat P, Souche E, Moszer I.

BMC Bioinformatics. 2013 Sep 22;14:277. doi: 10.1186/1471-2105-14-277.

11.

GeneViTo: visualizing gene-product functional and structural features in genomic datasets.

Vernikos GS, Gkogkas CG, Promponas VJ, Hamodrakas SJ.

BMC Bioinformatics. 2003 Oct 31;4:53.

12.

GenColors: annotation and comparative genomics of prokaryotes made easy.

Romualdi A, Felder M, Rose D, Gausmann U, Schilhabel M, Glöckner G, Platzer M, Sühnel J.

Methods Mol Biol. 2007;395:75-96.

PMID:
17993668
13.

SInC: an accurate and fast error-model based simulator for SNPs, Indels and CNVs coupled with a read generator for short-read sequence data.

Pattnaik S, Gupta S, Rao AA, Panda B.

BMC Bioinformatics. 2014 Feb 5;15:40. doi: 10.1186/1471-2105-15-40.

14.

SNVerGUI: a desktop tool for variant analysis of next-generation sequencing data.

Wang W, Hu W, Hou F, Hu P, Wei Z.

J Med Genet. 2012 Dec;49(12):753-5. doi: 10.1136/jmedgenet-2012-101001. Epub 2012 Sep 28.

PMID:
23024288
15.

Chromhome: a rich internet application for accessing comparative chromosome homology maps.

Nagarajan S, Rens W, Stalker J, Cox T, Ferguson-Smith MA.

BMC Bioinformatics. 2008 Mar 26;9:168. doi: 10.1186/1471-2105-9-168.

16.

Visualization of comparative genomic analyses by BLAST score ratio.

Rasko DA, Myers GS, Ravel J.

BMC Bioinformatics. 2005 Jan 5;6:2.

17.

PSAT: a web tool to compare genomic neighborhoods of multiple prokaryotic genomes.

Fong C, Rohmer L, Radey M, Wasnick M, Brittnacher MJ.

BMC Bioinformatics. 2008 Mar 26;9:170. doi: 10.1186/1471-2105-9-170.

18.
19.

WebACT--an online companion for the Artemis Comparison Tool.

Abbott JC, Aanensen DM, Rutherford K, Butcher S, Spratt BG.

Bioinformatics. 2005 Sep 15;21(18):3665-6. Epub 2005 Aug 2.

20.

MicrobeDB: a locally maintainable database of microbial genomic sequences.

Langille MG, Laird MR, Hsiao WW, Chiu TA, Eisen JA, Brinkman FS.

Bioinformatics. 2012 Jul 15;28(14):1947-8. doi: 10.1093/bioinformatics/bts273. Epub 2012 May 9.

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