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Results: 1 to 20 of 118

1.

Frequent pseudogenization and loss of the plastid-encoded sulfate-transport gene cysA throughout the evolution of liverworts.

Wickett NJ, Forrest LL, Budke JM, Shaw B, Goffinet B.

Am J Bot. 2011 Aug;98(8):1263-75. doi: 10.3732/ajb.1100010.

PMID:
21821590
[PubMed - indexed for MEDLINE]
Free Article
2.

Distribution and evolution of pseudogenes, gene losses, and a gene rearrangement in the plastid genome of the nonphotosynthetic liverwort, Aneura mirabilis (Metzgeriales, Jungermanniopsida).

Wickett NJ, Fan Y, Lewis PO, Goffinet B.

J Mol Evol. 2008 Jul;67(1):111-22. doi: 10.1007/s00239-008-9133-1. Epub 2008 Jul 2.

PMID:
18594897
[PubMed - indexed for MEDLINE]
3.

Functional gene losses occur with minimal size reduction in the plastid genome of the parasitic liverwort Aneura mirabilis.

Wickett NJ, Zhang Y, Hansen SK, Roper JM, Kuehl JV, Plock SA, Wolf PG, DePamphilis CW, Boore JL, Goffinet B.

Mol Biol Evol. 2008 Feb;25(2):393-401. Epub 2007 Dec 1.

PMID:
18056074
[PubMed - indexed for MEDLINE]
Free Article
4.

Inferring the higher-order phylogeny of mosses (Bryophyta) and relatives using a large, multigene plastid data set.

Chang Y, Graham SW.

Am J Bot. 2011 May;98(5):839-49. doi: 10.3732/ajb.0900384.

PMID:
21613185
[PubMed - indexed for MEDLINE]
Free Article
5.
6.

Plastid genome evolution across the genus Cuscuta (Convolvulaceae): two clades within subgenus Grammica exhibit extensive gene loss.

Braukmann T, Kuzmina M, Stefanovic S.

J Exp Bot. 2013 Feb;64(4):977-89. doi: 10.1093/jxb/ers391. Epub 2013 Jan 23.

PMID:
23349139
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Rate variation in parasitic plants: correlated and uncorrelated patterns among plastid genes of different function.

Young ND, dePamphilis CW.

BMC Evol Biol. 2005 Feb 15;5:16.

PMID:
15713237
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Phylogeny of plastids based on cladistic analysis of gene loss inferred from complete plastid genome sequences.

Nozaki H, Ohta N, Matsuzaki M, Misumi O, Kuroiwa T.

J Mol Evol. 2003 Oct;57(4):377-82.

PMID:
14708571
[PubMed - indexed for MEDLINE]
9.

Phylogeny, rate variation, and genome size evolution of Pelargonium (Geraniaceae).

Weng ML, Ruhlman TA, Gibby M, Jansen RK.

Mol Phylogenet Evol. 2012 Sep;64(3):654-70. doi: 10.1016/j.ympev.2012.05.026. Epub 2012 Jun 4.

PMID:
22677167
[PubMed - indexed for MEDLINE]
10.

Recent loss of plastid-encoded ndh genes within Erodium (Geraniaceae).

Chris Blazier J, Guisinger MM, Jansen RK.

Plant Mol Biol. 2011 Jul;76(3-5):263-72. doi: 10.1007/s11103-011-9753-5. Epub 2011 Feb 16.

PMID:
21327834
[PubMed - indexed for MEDLINE]
11.

Whole-gene positive selection, elevated synonymous substitution rates, duplication, and indel evolution of the chloroplast clpP1 gene.

Erixon P, Oxelman B.

PLoS One. 2008 Jan 2;3(1):e1386. doi: 10.1371/journal.pone.0001386.

PMID:
18167545
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Complete plastid genome sequences of three Rosids (Castanea, Prunus, Theobroma): evidence for at least two independent transfers of rpl22 to the nucleus.

Jansen RK, Saski C, Lee SB, Hansen AK, Daniell H.

Mol Biol Evol. 2011 Jan;28(1):835-47. doi: 10.1093/molbev/msq261. Epub 2010 Oct 8.

PMID:
20935065
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Parallel loss of plastid introns and their maturase in the genus Cuscuta.

McNeal JR, Kuehl JV, Boore JL, Leebens-Mack J, dePamphilis CW.

PLoS One. 2009 Jun 19;4(6):e5982. doi: 10.1371/journal.pone.0005982.

PMID:
19543388
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Bryophyte-specific primers for retrieving plastid genes suitable for phylogenetic inference.

Chang Y, Graham SW.

Am J Bot. 2011 May;98(5):e109-13. doi: 10.3732/ajb.1000321.

PMID:
21613174
[PubMed - indexed for MEDLINE]
Free Article
15.

Nuclear DNA content variation and evolution in liverworts.

Bainard JD, Forrest LL, Goffinet B, Newmaster SG.

Mol Phylogenet Evol. 2013 Sep;68(3):619-27. doi: 10.1016/j.ympev.2013.04.008. Epub 2013 Apr 23.

PMID:
23624193
[PubMed - indexed for MEDLINE]
16.

The plastid genome of the hornwort Nothoceros aenigmaticus (Dendrocerotaceae): phylogenetic signal in inverted repeat expansion, pseudogenization, and intron gain.

Villarreal JC, Forrest LL, Wickett N, Goffinet B.

Am J Bot. 2013 Mar;100(3):467-77. doi: 10.3732/ajb.1200429. Epub 2013 Feb 15.

PMID:
23416362
[PubMed - indexed for MEDLINE]
Free Article
17.

Phylogeny and intraspecific variability of holoparasitic Orobanche (Orobanchaceae) inferred from plastid rbcL sequences.

Manen JF, Habashi C, Jeanmonod D, Park JM, Schneeweiss GM.

Mol Phylogenet Evol. 2004 Nov;33(2):482-500.

PMID:
15336681
[PubMed - indexed for MEDLINE]
18.

Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL.

Gaut BS, Morton BR, McCaig BC, Clegg MT.

Proc Natl Acad Sci U S A. 1996 Sep 17;93(19):10274-9.

PMID:
8816790
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Plastid genome sequence of the cryptophyte alga Rhodomonas salina CCMP1319: lateral transfer of putative DNA replication machinery and a test of chromist plastid phylogeny.

Khan H, Parks N, Kozera C, Curtis BA, Parsons BJ, Bowman S, Archibald JM.

Mol Biol Evol. 2007 Aug;24(8):1832-42. Epub 2007 May 23.

PMID:
17522086
[PubMed - indexed for MEDLINE]
Free Article
20.

Genome evolution of a tertiary dinoflagellate plastid.

Gabrielsen TM, Minge MA, Espelund M, Tooming-Klunderud A, Patil V, Nederbragt AJ, Otis C, Turmel M, Shalchian-Tabrizi K, Lemieux C, Jakobsen KS.

PLoS One. 2011 Apr 26;6(4):e19132. doi: 10.1371/journal.pone.0019132.

PMID:
21541332
[PubMed - indexed for MEDLINE]
Free PMC Article

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