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Results: 1 to 20 of 133

1.

Metabolic network reconstruction of Chlamydomonas offers insight into light-driven algal metabolism.

Chang RL, Ghamsari L, Manichaikul A, Hom EF, Balaji S, Fu W, Shen Y, Hao T, Palsson BØ, Salehi-Ashtiani K, Papin JA.

Mol Syst Biol. 2011 Aug 2;7:518. doi: 10.1038/msb.2011.52.

PMID:
21811229
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Flux balance analysis of primary metabolism in Chlamydomonas reinhardtii.

Boyle NR, Morgan JA.

BMC Syst Biol. 2009 Jan 7;3:4. doi: 10.1186/1752-0509-3-4.

PMID:
19128495
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

AlgaGEM--a genome-scale metabolic reconstruction of algae based on the Chlamydomonas reinhardtii genome.

Dal'Molin CG, Quek LE, Palfreyman RW, Nielsen LK.

BMC Genomics. 2011 Dec 22;12 Suppl 4:S5. doi: 10.1186/1471-2164-12-S4-S5. Epub 2011 Dec 22.

PMID:
22369158
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Network reduction in metabolic pathway analysis: elucidation of the key pathways involved in the photoautotrophic growth of the green alga Chlamydomonas reinhardtii.

Rügen M, Bockmayr A, Legrand J, Cogne G.

Metab Eng. 2012 Jul;14(4):458-67. doi: 10.1016/j.ymben.2012.01.009. Epub 2012 Feb 10.

PMID:
22342232
[PubMed - indexed for MEDLINE]
5.

Genome-wide functional annotation and structural verification of metabolic ORFeome of Chlamydomonas reinhardtii.

Ghamsari L, Balaji S, Shen Y, Yang X, Balcha D, Fan C, Hao T, Yu H, Papin JA, Salehi-Ashtiani K.

BMC Genomics. 2011 Jun 15;12 Suppl 1:S4. doi: 10.1186/1471-2164-12-S1-S4.

PMID:
21810206
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii.

May P, Wienkoop S, Kempa S, Usadel B, Christian N, Rupprecht J, Weiss J, Recuenco-Munoz L, Ebenhöh O, Weckwerth W, Walther D.

Genetics. 2008 May;179(1):157-66. doi: 10.1534/genetics.108.088336.

PMID:
18493048
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Metabolic network analysis integrated with transcript verification for sequenced genomes.

Manichaikul A, Ghamsari L, Hom EF, Lin C, Murray RR, Chang RL, Balaji S, Hao T, Shen Y, Chavali AK, Thiele I, Yang X, Fan C, Mello E, Hill DE, Vidal M, Salehi-Ashtiani K, Papin JA.

Nat Methods. 2009 Aug;6(8):589-92. doi: 10.1038/nmeth.1348. Epub 2009 Jul 13.

PMID:
19597503
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Lumped pathway metabolic model of organic carbon accumulation and mobilization by the alga Chlamydomonas reinhardtii.

Guest JS, van Loosdrecht MC, Skerlos SJ, Love NG.

Environ Sci Technol. 2013 Apr 2;47(7):3258-67. doi: 10.1021/es304980y. Epub 2013 Mar 15.

PMID:
23452258
[PubMed - indexed for MEDLINE]
9.

Metabolic systems analysis to advance algal biotechnology.

Schmidt BJ, Lin-Schmidt X, Chamberlin A, Salehi-Ashtiani K, Papin JA.

Biotechnol J. 2010 Jul;5(7):660-70. doi: 10.1002/biot.201000129. Review.

PMID:
20665641
[PubMed - indexed for MEDLINE]
10.

Mutagenesis and phenotypic selection as a strategy toward domestication of Chlamydomonas reinhardtii strains for improved performance in photobioreactors.

Bonente G, Formighieri C, Mantelli M, Catalanotti C, Giuliano G, Morosinotto T, Bassi R.

Photosynth Res. 2011 Sep;108(2-3):107-20. doi: 10.1007/s11120-011-9660-2. Epub 2011 May 6.

PMID:
21547493
[PubMed - indexed for MEDLINE]
11.

MicrobesFlux: a web platform for drafting metabolic models from the KEGG database.

Feng X, Xu Y, Chen Y, Tang YJ.

BMC Syst Biol. 2012 Aug 2;6:94.

PMID:
22857267
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Genome-scale models of bacterial metabolism: reconstruction and applications.

Durot M, Bourguignon PY, Schachter V.

FEMS Microbiol Rev. 2009 Jan;33(1):164-90. doi: 10.1111/j.1574-6976.2008.00146.x. Epub 2008 Dec 3. Review.

PMID:
19067749
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

A model-based method for investigating bioenergetic processes in autotrophically growing eukaryotic microalgae: application to the green algae Chlamydomonas reinhardtii.

Cogne G, Rügen M, Bockmayr A, Titica M, Dussap CG, Cornet JF, Legrand J.

Biotechnol Prog. 2011 May-Jun;27(3):631-40. doi: 10.1002/btpr.596. Epub 2011 May 12.

PMID:
21567987
[PubMed - indexed for MEDLINE]
14.

Regulation of the pigment optical density of an algal cell: filling the gap between photosynthetic productivity in the laboratory and in mass culture.

Formighieri C, Franck F, Bassi R.

J Biotechnol. 2012 Nov 30;162(1):115-23. doi: 10.1016/j.jbiotec.2012.02.021. Epub 2012 Mar 7.

PMID:
22426090
[PubMed - indexed for MEDLINE]
15.

tla1, a DNA insertional transformant of the green alga Chlamydomonas reinhardtii with a truncated light-harvesting chlorophyll antenna size.

Polle JE, Kanakagiri SD, Melis A.

Planta. 2003 May;217(1):49-59. Epub 2003 Feb 12.

PMID:
12721848
[PubMed - indexed for MEDLINE]
16.

Genome-scale reconstruction and analysis of the Pseudomonas putida KT2440 metabolic network facilitates applications in biotechnology.

Puchałka J, Oberhardt MA, Godinho M, Bielecka A, Regenhardt D, Timmis KN, Papin JA, Martins dos Santos VA.

PLoS Comput Biol. 2008 Oct;4(10):e1000210. doi: 10.1371/journal.pcbi.1000210. Epub 2008 Oct 31.

PMID:
18974823
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

GEMSiRV: a software platform for GEnome-scale metabolic model simulation, reconstruction and visualization.

Liao YC, Tsai MH, Chen FC, Hsiung CA.

Bioinformatics. 2012 Jul 1;28(13):1752-8. doi: 10.1093/bioinformatics/bts267. Epub 2012 May 4.

PMID:
22563070
[PubMed - indexed for MEDLINE]
Free Article
18.

An integrative approach towards completing genome-scale metabolic networks.

Christian N, May P, Kempa S, Handorf T, Ebenhöh O.

Mol Biosyst. 2009 Dec;5(12):1889-903. doi: 10.1039/B915913b. Epub 2009 Sep 10.

PMID:
19763335
[PubMed - indexed for MEDLINE]
19.

Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052.

Milne CB, Eddy JA, Raju R, Ardekani S, Kim PJ, Senger RS, Jin YS, Blaschek HP, Price ND.

BMC Syst Biol. 2011 Aug 16;5:130. doi: 10.1186/1752-0509-5-130.

PMID:
21846360
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Comprehensive comparison of iTRAQ and label-free LC-based quantitative proteomics approaches using two Chlamydomonas reinhardtii strains of interest for biofuels engineering.

Wang H, Alvarez S, Hicks LM.

J Proteome Res. 2012 Jan 1;11(1):487-501. doi: 10.1021/pr2008225. Epub 2011 Dec 1.

PMID:
22059437
[PubMed - indexed for MEDLINE]

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