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Results: 1 to 20 of 122

1.

Genome-wide functional annotation and structural verification of metabolic ORFeome of Chlamydomonas reinhardtii.

Ghamsari L, Balaji S, Shen Y, Yang X, Balcha D, Fan C, Hao T, Yu H, Papin JA, Salehi-Ashtiani K.

BMC Genomics. 2011 Jun 15;12 Suppl 1:S4. doi: 10.1186/1471-2164-12-S1-S4.

PMID:
21810206
[PubMed - indexed for MEDLINE]
Free PMC Article
2.
3.

Flux balance analysis of primary metabolism in Chlamydomonas reinhardtii.

Boyle NR, Morgan JA.

BMC Syst Biol. 2009 Jan 7;3:4. doi: 10.1186/1752-0509-3-4.

PMID:
19128495
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

AlgaGEM--a genome-scale metabolic reconstruction of algae based on the Chlamydomonas reinhardtii genome.

Dal'Molin CG, Quek LE, Palfreyman RW, Nielsen LK.

BMC Genomics. 2011 Dec 22;12 Suppl 4:S5. doi: 10.1186/1471-2164-12-S4-S5. Epub 2011 Dec 22.

PMID:
22369158
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

The full-ORF clone resource of the German cDNA Consortium.

Bechtel S, Rosenfelder H, Duda A, Schmidt CP, Ernst U, Wellenreuther R, Mehrle A, Schuster C, Bahr A, Blöcker H, Heubner D, Hoerlein A, Michel G, Wedler H, Köhrer K, Ottenwälder B, Poustka A, Wiemann S, Schupp I.

BMC Genomics. 2007 Oct 31;8:399.

PMID:
17974005
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Metabolic network reconstruction of Chlamydomonas offers insight into light-driven algal metabolism.

Chang RL, Ghamsari L, Manichaikul A, Hom EF, Balaji S, Fu W, Shen Y, Hao T, Palsson BØ, Salehi-Ashtiani K, Papin JA.

Mol Syst Biol. 2011 Aug 2;7:518. doi: 10.1038/msb.2011.52.

PMID:
21811229
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii.

Toepel J, Albaum SP, Arvidsson S, Goesmann A, la Russa M, Rogge K, Kruse O.

BMC Genomics. 2011 Nov 25;12:579. doi: 10.1186/1471-2164-12-579.

PMID:
22118351
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Metabolic network analysis integrated with transcript verification for sequenced genomes.

Manichaikul A, Ghamsari L, Hom EF, Lin C, Murray RR, Chang RL, Balaji S, Hao T, Shen Y, Chavali AK, Thiele I, Yang X, Fan C, Mello E, Hill DE, Vidal M, Salehi-Ashtiani K, Papin JA.

Nat Methods. 2009 Aug;6(8):589-92. doi: 10.1038/nmeth.1348. Epub 2009 Jul 13.

PMID:
19597503
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression.

Reboul J, Vaglio P, Rual JF, Lamesch P, Martinez M, Armstrong CM, Li S, Jacotot L, Bertin N, Janky R, Moore T, Hudson JR Jr, Hartley JL, Brasch MA, Vandenhaute J, Boulton S, Endress GA, Jenna S, Chevet E, Papasotiropoulos V, Tolias PP, Ptacek J, Snyder M, Huang R, Chance MR, Lee H, Doucette-Stamm L, Hill DE, Vidal M.

Nat Genet. 2003 May;34(1):35-41.

PMID:
12679813
[PubMed - indexed for MEDLINE]
10.

Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii.

May P, Wienkoop S, Kempa S, Usadel B, Christian N, Rupprecht J, Weiss J, Recuenco-Munoz L, Ebenhöh O, Weckwerth W, Walther D.

Genetics. 2008 May;179(1):157-66. doi: 10.1534/genetics.108.088336.

PMID:
18493048
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Revisiting the Saccharomyces cerevisiae predicted ORFeome.

Li QR, Carvunis AR, Yu H, Han JD, Zhong Q, Simonis N, Tam S, Hao T, Klitgord NJ, Dupuy D, Mou D, Wapinski I, Regev A, Hill DE, Cusick ME, Vidal M.

Genome Res. 2008 Aug;18(8):1294-303. doi: 10.1101/gr.076661.108. Epub 2008 May 23.

PMID:
18502943
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

C. elegans ORFeome version 3.1: increasing the coverage of ORFeome resources with improved gene predictions.

Lamesch P, Milstein S, Hao T, Rosenberg J, Li N, Sequerra R, Bosak S, Doucette-Stamm L, Vandenhaute J, Hill DE, Vidal M.

Genome Res. 2004 Oct;14(10B):2064-9.

PMID:
15489327
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Improved annotation through genome-scale metabolic modeling of Aspergillus oryzae.

Vongsangnak W, Olsen P, Hansen K, Krogsgaard S, Nielsen J.

BMC Genomics. 2008 May 23;9:245. doi: 10.1186/1471-2164-9-245.

PMID:
18500999
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The catalytic group-I introns of the psbA gene of chlamydomonas reinhardtii : core structures, ORFs and evolutionary implications.

Holloway SP, Deshpande NN, Herrin DL.

Curr Genet. 1999 Aug;36(1-2):69-78.

PMID:
10447597
[PubMed - indexed for MEDLINE]
15.

The chloroplast proteome: a survey from the Chlamydomonas reinhardtii perspective with a focus on distinctive features.

Terashima M, Specht M, Hippler M.

Curr Genet. 2011 Jun;57(3):151-68. doi: 10.1007/s00294-011-0339-1. Epub 2011 Apr 30. Review.

PMID:
21533645
[PubMed - indexed for MEDLINE]
16.

Targeted proteomics for Chlamydomonas reinhardtii combined with rapid subcellular protein fractionation, metabolomics and metabolic flux analyses.

Wienkoop S, Weiss J, May P, Kempa S, Irgang S, Recuenco-Munoz L, Pietzke M, Schwemmer T, Rupprecht J, Egelhofer V, Weckwerth W.

Mol Biosyst. 2010 Jun;6(6):1018-31. doi: 10.1039/b920913a. Epub 2010 Mar 31.

PMID:
20358043
[PubMed - indexed for MEDLINE]
17.

Concerted action of the new Genomic Peptide Finder and AUGUSTUS allows for automated proteogenomic annotation of the Chlamydomonas reinhardtii genome.

Specht M, Stanke M, Terashima M, Naumann-Busch B, Janssen I, Höhner R, Hom EF, Liang C, Hippler M.

Proteomics. 2011 May;11(9):1814-23. doi: 10.1002/pmic.201000621. Epub 2011 Mar 22.

PMID:
21432999
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Chloroplast elongation factor ts pro-protein is an evolutionarily conserved fusion with the s1 domain-containing plastid-specific ribosomal protein-7.

Beligni MV, Yamaguchi K, Mayfield SP.

Plant Cell. 2004 Dec;16(12):3357-69. Epub 2004 Nov 17.

PMID:
15548736
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Chlamydomonas reinhardtii proteomics.

Stauber EJ, Hippler M.

Plant Physiol Biochem. 2004 Dec;42(12):989-1001. Epub 2005 Jan 18. Review.

PMID:
15707836
[PubMed - indexed for MEDLINE]
20.

Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions.

Wei C, Lamesch P, Arumugam M, Rosenberg J, Hu P, Vidal M, Brent MR.

Genome Res. 2005 Apr;15(4):577-82.

PMID:
15805498
[PubMed - indexed for MEDLINE]
Free PMC Article
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