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Items: 1 to 20 of 122

1.

Precise manipulation of chromosomes in vivo enables genome-wide codon replacement.

Isaacs FJ, Carr PA, Wang HH, Lajoie MJ, Sterling B, Kraal L, Tolonen AC, Gianoulis TA, Goodman DB, Reppas NB, Emig CJ, Bang D, Hwang SJ, Jewett MC, Jacobson JM, Church GM.

Science. 2011 Jul 15;333(6040):348-53. doi: 10.1126/science.1205822.

2.

Precise manipulation of bacterial chromosomes by conjugative assembly genome engineering.

Ma NJ, Moonan DW, Isaacs FJ.

Nat Protoc. 2014 Oct;9(10):2285-300. doi: 10.1038/nprot.2014.081. Epub 2014 Sep 4.

PMID:
25188631
3.

Programming cells by multiplex genome engineering and accelerated evolution.

Wang HH, Isaacs FJ, Carr PA, Sun ZZ, Xu G, Forest CR, Church GM.

Nature. 2009 Aug 13;460(7257):894-8. doi: 10.1038/nature08187. Epub 2009 Jul 26.

4.

Rapid editing and evolution of bacterial genomes using libraries of synthetic DNA.

Gallagher RR, Li Z, Lewis AO, Isaacs FJ.

Nat Protoc. 2014 Oct;9(10):2301-16. doi: 10.1038/nprot.2014.082. Epub 2014 Sep 4.

PMID:
25188632
5.

Genome-scale genetic engineering in Escherichia coli.

Jeong J, Cho N, Jung D, Bang D.

Biotechnol Adv. 2013 Nov;31(6):804-10. doi: 10.1016/j.biotechadv.2013.04.003. Epub 2013 Apr 24. Review.

PMID:
23624241
6.

Stop codons in bacteria are not selectively equivalent.

Povolotskaya IS, Kondrashov FA, Ledda A, Vlasov PK.

Biol Direct. 2012 Sep 13;7:30. doi: 10.1186/1745-6150-7-30.

7.

Point mutation of bacterial artificial chromosomes by ET recombination.

Muyrers JP, Zhang Y, Benes V, Testa G, Ansorge W, Stewart AF.

EMBO Rep. 2000 Sep;1(3):239-43.

8.

Enhanced multiplex genome engineering through co-operative oligonucleotide co-selection.

Carr PA, Wang HH, Sterling B, Isaacs FJ, Lajoie MJ, Xu G, Church GM, Jacobson JM.

Nucleic Acids Res. 2012 Sep 1;40(17):e132. Epub 2012 May 25.

9.
10.

Generation of sequence variants via accelerated molecular evolution methods.

Fu M, Zhang X, Lai X, Wu X, Feng F, Peng J, Zhong H, Zhang Y, Wang Y, Zhou Q, Wang S, Chen L, He Z, Gao Y, Ma X, He R, Liu Q.

Recent Pat DNA Gene Seq. 2013 Aug;7(2):144-56.

PMID:
23388030
11.

Gene replacement without selection: regulated suppression of amber mutations in Escherichia coli.

Herring CD, Glasner JD, Blattner FR.

Gene. 2003 Jun 5;311:153-63.

PMID:
12853150
12.

The dawn of evolutionary genome engineering.

Pál C, Papp B, Pósfai G.

Nat Rev Genet. 2014 Jul;15(7):504-12. doi: 10.1038/nrg3746. Epub 2014 May 28. Review.

PMID:
24866756
13.

Strain engineering by genome mass transfer: efficient chromosomal trait transfer method utilizing donor genomic DNA and recipient recombineering hosts.

Williams JA, Luke J, Hodgson C.

Mol Biotechnol. 2009 Sep;43(1):41-51. doi: 10.1007/s12033-009-9177-5. Epub 2009 May 20.

PMID:
19455439
14.

Engineering large fragment insertions into the chromosome of Escherichia coli.

Rong R, Slupska MM, Chiang JH, Miller JH.

Gene. 2004 Jul 7;336(1):73-80.

PMID:
15225877
15.

A simple and effective method for construction of Escherichia coli strains proficient for genome engineering.

Ryu YS, Biswas RK, Shin K, Parisutham V, Kim SM, Lee SK.

PLoS One. 2014 Apr 18;9(4):e94266. doi: 10.1371/journal.pone.0094266. eCollection 2014.

16.
17.

Minimization of the Escherichia coli genome using a Tn5-targeted Cre/loxP excision system.

Yu BJ, Sung BH, Koob MD, Lee CH, Lee JH, Lee WS, Kim MS, Kim SC.

Nat Biotechnol. 2002 Oct;20(10):1018-23. Epub 2002 Sep 16.

PMID:
12244329
18.

Design, synthesis, and testing toward a 57-codon genome.

Ostrov N, Landon M, Guell M, Kuznetsov G, Teramoto J, Cervantes N, Zhou M, Singh K, Napolitano MG, Moosburner M, Shrock E, Pruitt BW, Conway N, Goodman DB, Gardner CL, Tyree G, Gonzales A, Wanner BL, Norville JE, Lajoie MJ, Church GM.

Science. 2016 Aug 19;353(6301):819-22. doi: 10.1126/science.aaf3639.

PMID:
27540174
19.
20.

Codon usages in different gene classes of the Escherichia coli genome.

Karlin S, Mrázek J, Campbell AM.

Mol Microbiol. 1998 Sep;29(6):1341-55.

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