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Items: 1 to 20 of 113

1.

EuroPineDB: a high-coverage web database for maritime pine transcriptome.

Fernández-Pozo N, Canales J, Guerrero-Fernández D, Villalobos DP, Díaz-Moreno SM, Bautista R, Flores-Monterroso A, Guevara MÁ, Perdiguero P, Collada C, Cervera MT, Soto A, Ordás R, Cantón FR, Avila C, Cánovas FM, Claros MG.

BMC Genomics. 2011 Jul 15;12:366. doi: 10.1186/1471-2164-12-366.

2.

De novo assembly of maritime pine transcriptome: implications for forest breeding and biotechnology.

Canales J, Bautista R, Label P, Gómez-Maldonado J, Lesur I, Fernández-Pozo N, Rueda-López M, Guerrero-Fernández D, Castro-Rodríguez V, Benzekri H, Cañas RA, Guevara MA, Rodrigues A, Seoane P, Teyssier C, Morel A, Ehrenmann F, Le Provost G, Lalanne C, Noirot C, Klopp C, Reymond I, García-Gutiérrez A, Trontin JF, Lelu-Walter MA, Miguel C, Cervera MT, Cantón FR, Plomion C, Harvengt L, Avila C, Gonzalo Claros M, Cánovas FM.

Plant Biotechnol J. 2014 Apr;12(3):286-99. doi: 10.1111/pbi.12136. Epub 2013 Nov 21.

3.

Searching for resistance genes to Bursaphelenchus xylophilus using high throughput screening.

Santos CS, Pinheiro M, Silva AI, Egas C, Vasconcelos MW.

BMC Genomics. 2012 Nov 7;13:599. doi: 10.1186/1471-2164-13-599.

4.

Generation and analysis of expressed sequence tags from six developing xylem libraries in Pinus radiata D. Don.

Li X, Wu HX, Dillon SK, Southerton SG.

BMC Genomics. 2009 Jan 21;10:41. doi: 10.1186/1471-2164-10-41.

5.

Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine.

Chancerel E, Lepoittevin C, Le Provost G, Lin YC, Jaramillo-Correa JP, Eckert AJ, Wegrzyn JL, Zelenika D, Boland A, Frigerio JM, Chaumeil P, Garnier-Géré P, Boury C, Grivet D, González-Martínez SC, Rouzé P, Van de Peer Y, Neale DB, Cervera MT, Kremer A, Plomion C.

BMC Genomics. 2011 Jul 18;12:368. doi: 10.1186/1471-2164-12-368.

6.

A genome-wide 20 K citrus microarray for gene expression analysis.

Martinez-Godoy MA, Mauri N, Juarez J, Marques MC, Santiago J, Forment J, Gadea J.

BMC Genomics. 2008 Jul 3;9:318. doi: 10.1186/1471-2164-9-318.

7.

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery.

Parchman TL, Geist KS, Grahnen JA, Benkman CW, Buerkle CA.

BMC Genomics. 2010 Mar 16;11:180. doi: 10.1186/1471-2164-11-180.

8.

Global transcriptome profiling of the pine shoot beetle, Tomicus yunnanensis (Coleoptera: Scolytinae).

Zhu JY, Zhao N, Yang B.

PLoS One. 2012;7(2):e32291. doi: 10.1371/journal.pone.0032291. Epub 2012 Feb 23.

9.

Transcriptional analysis of differentially expressed genes in response to stem inclination in young seedlings of pine.

Ramos P, Le Provost G, Gantz C, Plomion C, Herrera R.

Plant Biol (Stuttg). 2012 Nov;14(6):923-33. doi: 10.1111/j.1438-8677.2012.00572.x. Epub 2012 May 30.

PMID:
22646487
10.

Transcriptome characterisation of Pinus tabuliformis and evolution of genes in the Pinus phylogeny.

Niu SH, Li ZX, Yuan HW, Chen XY, Li Y, Li W.

BMC Genomics. 2013 Apr 18;14:263. doi: 10.1186/1471-2164-14-263.

11.

Comparative high-throughput transcriptome sequencing and development of SiESTa, the Silene EST annotation database.

Blavet N, Charif D, Oger-Desfeux C, Marais GA, Widmer A.

BMC Genomics. 2011 Jul 26;12:376. doi: 10.1186/1471-2164-12-376.

12.

Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds.

Shi CY, Yang H, Wei CL, Yu O, Zhang ZZ, Jiang CJ, Sun J, Li YY, Chen Q, Xia T, Wan XC.

BMC Genomics. 2011 Feb 28;12:131. doi: 10.1186/1471-2164-12-131.

13.

GarlicESTdb: an online database and mining tool for garlic EST sequences.

Kim DW, Jung TS, Nam SH, Kwon HR, Kim A, Chae SH, Choi SH, Kim DW, Kim RN, Park HS.

BMC Plant Biol. 2009 May 18;9:61. doi: 10.1186/1471-2229-9-61.

14.

OrchidBase: a collection of sequences of the transcriptome derived from orchids.

Fu CH, Chen YW, Hsiao YY, Pan ZJ, Liu ZJ, Huang YM, Tsai WC, Chen HH.

Plant Cell Physiol. 2011 Feb;52(2):238-43. doi: 10.1093/pcp/pcq201. Epub 2011 Jan 17.

PMID:
21245031
15.

Transcriptome analysis in maritime pine using laser capture microdissection and 454 pyrosequencing.

Cañas RA, Canales J, Gómez-Maldonado J, Ávila C, Cánovas FM.

Tree Physiol. 2014 Nov;34(11):1278-88. doi: 10.1093/treephys/tpt113. Epub 2014 Jan 3.

PMID:
24391165
16.

CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

BMC Bioinformatics. 2007 Apr 19;8:129.

17.

Automated SNP detection in expressed sequence tags: statistical considerations and application to maritime pine sequences.

Dantec LL, Chagné D, Pot D, Cantin O, Garnier-Géré P, Bedon F, Frigerio JM, Chaumeil P, Léger P, Garcia V, Laigret F, De Daruvar A, Plomion C.

Plant Mol Biol. 2004 Feb;54(3):461-70.

PMID:
15284499
18.
19.

Whole-exome targeted sequencing of the uncharacterized pine genome.

Neves LG, Davis JM, Barbazuk WB, Kirst M.

Plant J. 2013 Jul;75(1):146-56. doi: 10.1111/tpj.12193. Epub 2013 May 7.

20.

Expressed sequence tags from loblolly pine embryos reveal similarities with angiosperm embryogenesis.

Cairney J, Zheng L, Cowels A, Hsiao J, Zismann V, Liu J, Ouyang S, Thibaud-Nissen F, Hamilton J, Childs K, Pullman GS, Zhang Y, Oh T, Buell CR.

Plant Mol Biol. 2006 Nov;62(4-5):485-501. Epub 2006 Sep 26.

PMID:
17001497
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