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Results: 1 to 20 of 94

Similar articles for PubMed (Select 21742635)

1.

DivBayes and SubT: exploring species diversification using Bayesian statistics.

Ryberg M, Nilsson RH, Matheny PB.

Bioinformatics. 2011 Sep 1;27(17):2439-40. doi: 10.1093/bioinformatics/btr405. Epub 2011 Jul 7.

2.

Hyperscape: Visualization for complex biological networks.

Cromar GL, Zhao A, Yang A, Parkinson J.

Bioinformatics. 2015 Jun 24. pii: btv385. [Epub ahead of print]

PMID:
26108529
3.

TiQuant: software for tissue analysis, quantification and surface reconstruction.

Friebel A, Neitsch J, Johann T, Hammad S, Hengstler JG, Drasdo D, Hoehme S.

Bioinformatics. 2015 Jun 3. pii: btv346. [Epub ahead of print]

PMID:
26040455
4.

SDMdata: A Web-Based Software Tool for Collecting Species Occurrence Records.

Kong X, Huang M, Duan R.

PLoS One. 2015 Jun 1;10(6):e0128295. doi: 10.1371/journal.pone.0128295. eCollection 2015.

5.

GeLL: a generalized likelihood library for phylogenetic models.

Money D, Whelan S.

Bioinformatics. 2015 Feb 27. pii: btv126. [Epub ahead of print]

PMID:
25725494
6.

ENVIRONMENTS and EOL: identification of Environment Ontology terms in text and the annotation of the Encyclopedia of Life.

Pafilis E, Frankild SP, Schnetzer J, Fanini L, Faulwetter S, Pavloudi C, Vasileiadou K, Leary P, Hammock J, Schulz K, Parr CS, Arvanitidis C, Jensen LJ.

Bioinformatics. 2015 Jun 1;31(11):1872-4. doi: 10.1093/bioinformatics/btv045. Epub 2015 Jan 24.

7.

Adaptive settings for the nearest-neighbor particle tracking algorithm.

Mazzaferri J, Roy J, Lefrancois S, Costantino S.

Bioinformatics. 2015 Apr 15;31(8):1279-85. doi: 10.1093/bioinformatics/btu793. Epub 2014 Dec 4.

PMID:
25480371
8.

A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data.

Coil D, Jospin G, Darling AE.

Bioinformatics. 2015 Feb 15;31(4):587-9. doi: 10.1093/bioinformatics/btu661. Epub 2014 Oct 22.

9.

AliView: a fast and lightweight alignment viewer and editor for large datasets.

Larsson A.

Bioinformatics. 2014 Nov 15;30(22):3276-8. doi: 10.1093/bioinformatics/btu531. Epub 2014 Aug 5.

10.

Metabomxtr: an R package for mixture-model analysis of non-targeted metabolomics data.

Nodzenski M, Muehlbauer MJ, Bain JR, Reisetter AC, Lowe WL Jr, Scholtens DM.

Bioinformatics. 2014 Nov 15;30(22):3287-8. doi: 10.1093/bioinformatics/btu509. Epub 2014 Jul 29.

11.

Global species richness estimates have not converged.

Caley MJ, Fisher R, Mengersen K.

Trends Ecol Evol. 2014 Apr;29(4):187-8. doi: 10.1016/j.tree.2014.02.002. Epub 2014 Feb 23. Review.

PMID:
24569101
12.

Bayesian joint analysis of heterogeneous genomics data.

Ray P, Zheng L, Lucas J, Carin L.

Bioinformatics. 2014 May 15;30(10):1370-6. doi: 10.1093/bioinformatics/btu064. Epub 2014 Jan 30.

13.

CAFE: an R package for the detection of gross chromosomal abnormalities from gene expression microarray data.

Bollen S, Leddin M, Andrade-Navarro MA, Mah N.

Bioinformatics. 2014 May 15;30(10):1484-5. doi: 10.1093/bioinformatics/btu028. Epub 2014 Jan 21.

14.

DIYABC v2.0: a software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and microsatellite data.

Cornuet JM, Pudlo P, Veyssier J, Dehne-Garcia A, Gautier M, Leblois R, Marin JM, Estoup A.

Bioinformatics. 2014 Jan 13. [Epub ahead of print]

PMID:
24389659
15.

Determining the subcellular location of new proteins from microscope images using local features.

Coelho LP, Kangas JD, Naik AW, Osuna-Highley E, Glory-Afshar E, Fuhrman M, Simha R, Berget PB, Jarvik JW, Murphy RF.

Bioinformatics. 2013 Sep 15;29(18):2343-9. doi: 10.1093/bioinformatics/btt392. Epub 2013 Jul 8.

16.

BNFinder2: Faster Bayesian network learning and Bayesian classification.

Dojer N, Bednarz P, Podsiadlo A, Wilczynski B.

Bioinformatics. 2013 Aug 15;29(16):2068-70. doi: 10.1093/bioinformatics/btt323. Epub 2013 Jul 1.

17.

PurBayes: estimating tumor cellularity and subclonality in next-generation sequencing data.

Larson NB, Fridley BL.

Bioinformatics. 2013 Aug 1;29(15):1888-9. doi: 10.1093/bioinformatics/btt293. Epub 2013 Jun 6.

18.

HiCNorm: removing biases in Hi-C data via Poisson regression.

Hu M, Deng K, Selvaraj S, Qin Z, Ren B, Liu JS.

Bioinformatics. 2012 Dec 1;28(23):3131-3. doi: 10.1093/bioinformatics/bts570. Epub 2012 Sep 27.

19.

DLRS: gene tree evolution in light of a species tree.

Sjöstrand J, Sennblad B, Arvestad L, Lagergren J.

Bioinformatics. 2012 Nov 15;28(22):2994-5. doi: 10.1093/bioinformatics/bts548. Epub 2012 Sep 14.

20.

bgc: Software for Bayesian estimation of genomic clines.

Gompert Z, Buerkle CA.

Mol Ecol Resour. 2012 Nov;12(6):1168-76. doi: 10.1111/1755-0998.12009.x. Epub 2012 Sep 14.

PMID:
22978657
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