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Results: 1 to 20 of 117

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1.

Binary classification of protein molecules into intrinsically disordered and ordered segments.

Fukuchi S, Hosoda K, Homma K, Gojobori T, Nishikawa K.

BMC Struct Biol. 2011 Jun 22;11:29. doi: 10.1186/1472-6807-11-29.

2.
3.

The unfoldomics decade: an update on intrinsically disordered proteins.

Dunker AK, Oldfield CJ, Meng J, Romero P, Yang JY, Chen JW, Vacic V, Obradovic Z, Uversky VN.

BMC Genomics. 2008 Sep 16;9 Suppl 2:S1. doi: 10.1186/1471-2164-9-S2-S1.

4.

Intrinsic disorder in the Protein Data Bank.

Le Gall T, Romero PR, Cortese MS, Uversky VN, Dunker AK.

J Biomol Struct Dyn. 2007 Feb;24(4):325-42.

PMID:
17206849
5.

Intrinsically disordered regions have specific functions in mitochondrial and nuclear proteins.

Homma K, Fukuchi S, Nishikawa K, Sakamoto S, Sugawara H.

Mol Biosyst. 2012 Jan;8(1):247-55. doi: 10.1039/c1mb05208j. Epub 2011 Aug 24.

PMID:
21866296
6.

Human transcription factors contain a high fraction of intrinsically disordered regions essential for transcriptional regulation.

Minezaki Y, Homma K, Kinjo AR, Nishikawa K.

J Mol Biol. 2006 Jun 16;359(4):1137-49. Epub 2006 Apr 25. Erratum in: J Mol Biol. 2006 Oct 13;363(1):309.

PMID:
16697407
7.

The GTOP database in 2009: updated content and novel features to expand and deepen insights into protein structures and functions.

Fukuchi S, Homma K, Sakamoto S, Sugawara H, Tateno Y, Gojobori T, Nishikawa K.

Nucleic Acids Res. 2009 Jan;37(Database issue):D333-7. doi: 10.1093/nar/gkn855. Epub 2008 Nov 4.

8.

Library of disordered patterns in 3D protein structures.

Lobanov MY, Furletova EI, Bogatyreva NS, Roytberg MA, Galzitskaya OV.

PLoS Comput Biol. 2010 Oct 14;6(10):e1000958. doi: 10.1371/journal.pcbi.1000958.

9.

Bioinformatics analysis of disordered proteins in prokaryotes.

Pavlović-Lažetić GM, Mitić NS, Kovačević JJ, Obradović Z, Malkov SN, Beljanski MV.

BMC Bioinformatics. 2011 Mar 2;12:66. doi: 10.1186/1471-2105-12-66.

10.

Natively unstructured loops differ from other loops.

Schlessinger A, Liu J, Rost B.

PLoS Comput Biol. 2007 Jul;3(7):e140.

11.

Intrinsically disordered proteins in human mitochondria.

Ito M, Tohsato Y, Sugisawa H, Kohara S, Fukuchi S, Nishikawa I, Nishikawa K.

Genes Cells. 2012 Oct;17(10):817-25. doi: 10.1111/gtc.12000. Epub 2012 Aug 22.

PMID:
22908957
12.

Coverage of whole proteome by structural genomics observed through protein homology modeling database.

Yura K, Yamaguchi A, Go M.

J Struct Funct Genomics. 2006 Jun;7(2):65-76. Epub 2006 Dec 5.

13.

Orderly order in protein intrinsic disorder distribution: disorder in 3500 proteomes from viruses and the three domains of life.

Xue B, Dunker AK, Uversky VN.

J Biomol Struct Dyn. 2012;30(2):137-49. doi: 10.1080/07391102.2012.675145.

PMID:
22702725
14.

Multi-domain proteins in the three kingdoms of life: orphan domains and other unassigned regions.

Ekman D, Björklund AK, Frey-Skött J, Elofsson A.

J Mol Biol. 2005 Apr 22;348(1):231-43.

PMID:
15808866
15.

HMMerThread: detecting remote, functional conserved domains in entire genomes by combining relaxed sequence-database searches with fold recognition.

Bradshaw CR, Surendranath V, Henschel R, Mueller MS, Habermann BH.

PLoS One. 2011 Mar 10;6(3):e17568. doi: 10.1371/journal.pone.0017568.

16.

The relationship between proteome size, structural disorder and organism complexity.

Schad E, Tompa P, Hegyi H.

Genome Biol. 2011 Dec 19;12(12):R120. doi: 10.1186/gb-2011-12-12-r120.

17.

Bioinformatical approaches to characterize intrinsically disordered/unstructured proteins.

Dosztányi Z, Mészáros B, Simon I.

Brief Bioinform. 2010 Mar;11(2):225-43. doi: 10.1093/bib/bbp061. Epub 2009 Dec 10. Review.

18.

Target selection for structural genomics based on combining fold recognition and crystallisation prediction methods: application to the human proteome.

Bray JE.

J Struct Funct Genomics. 2012 Mar;13(1):37-46. doi: 10.1007/s10969-012-9130-x. Epub 2012 Feb 22.

PMID:
22354707
20.

Prediction of intrinsic disorder and its use in functional proteomics.

Uversky VN, Radivojac P, Iakoucheva LM, Obradovic Z, Dunker AK.

Methods Mol Biol. 2007;408:69-92.

PMID:
18314578
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