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Items: 1 to 20 of 159

1.

Utility of formalin-fixed, paraffin-embedded liver biopsy specimens for global proteomic analysis in nonalcoholic steatohepatitis.

Bell LN, Saxena R, Mattar SG, You J, Wang M, Chalasani N.

Proteomics Clin Appl. 2011 Aug;5(7-8):397-404. doi: 10.1002/prca.201000144. Epub 2011 Jun 8.

2.

Equivalence of protein inventories obtained from formalin-fixed paraffin-embedded and frozen tissue in multidimensional liquid chromatography-tandem mass spectrometry shotgun proteomic analysis.

Sprung RW Jr, Brock JW, Tanksley JP, Li M, Washington MK, Slebos RJ, Liebler DC.

Mol Cell Proteomics. 2009 Aug;8(8):1988-98. doi: 10.1074/mcp.M800518-MCP200. Epub 2009 May 24.

3.

Protein extraction of formalin-fixed, paraffin-embedded tissue enables robust proteomic profiles by mass spectrometry.

Scicchitano MS, Dalmas DA, Boyce RW, Thomas HC, Frazier KS.

J Histochem Cytochem. 2009 Sep;57(9):849-60. doi: 10.1369/jhc.2009.953497. Epub 2009 May 26.

4.

Proteomic analysis of formalin-fixed paraffin-embedded pancreatic tissue using liquid chromatography tandem mass spectrometry.

Paulo JA, Lee LS, Banks PA, Steen H, Conwell DL.

Pancreas. 2012 Mar;41(2):175-85. doi: 10.1097/MPA.0b013e318227a6b7.

5.

Validation of a robust proteomic analysis carried out on formalin-fixed paraffin-embedded tissues of the pancreas obtained from mouse and human.

Kojima K, Bowersock GJ, Kojima C, Klug CA, Grizzle WE, Mobley JA.

Proteomics. 2012 Nov;12(22):3393-402. doi: 10.1002/pmic.201100663.

6.

Elevated pressure improves the extraction and identification of proteins recovered from formalin-fixed, paraffin-embedded tissue surrogates.

Fowler CB, Chesnick IE, Moore CD, O'Leary TJ, Mason JT.

PLoS One. 2010 Dec 8;5(12):e14253. doi: 10.1371/journal.pone.0014253.

7.

Initial development and validation of a novel extraction method for quantitative mining of the formalin-fixed, paraffin-embedded tissue proteome for biomarker investigations.

Nirmalan NJ, Hughes C, Peng J, McKenna T, Langridge J, Cairns DA, Harnden P, Selby PJ, Banks RE.

J Proteome Res. 2011 Feb 4;10(2):896-906. doi: 10.1021/pr100812d. Epub 2010 Dec 23.

8.

Integrated and convenient procedure for protein extraction from formalin-fixed, paraffin-embedded tissues for LC-MS/MS analysis.

Lai X, Schneider BP.

Proteomics. 2014 Nov;14(21-22):2623-7. doi: 10.1002/pmic.201400110. Epub 2014 Sep 5.

PMID:
25091982
9.

Impact of pre-analytical factors on the proteomic analysis of formalin-fixed paraffin-embedded tissue.

Thompson SM, Craven RA, Nirmalan NJ, Harnden P, Selby PJ, Banks RE.

Proteomics Clin Appl. 2013 Apr;7(3-4):241-51. doi: 10.1002/prca.201200086. Epub 2013 Mar 6. Review.

10.

Application of 2-D DIGE to formalin-fixed, paraffin-embedded tissues.

Tanca A, Pagnozzi D, Falchi G, Tonelli R, Rocca S, Roggio T, Uzzau S, Addis MF.

Proteomics. 2011 Mar;11(5):1005-11. doi: 10.1002/pmic.201000353. Epub 2011 Jan 31.

PMID:
21337705
11.

Unrestricted modification search reveals lysine methylation as major modification induced by tissue formalin fixation and paraffin embedding.

Zhang Y, Muller M, Xu B, Yoshida Y, Horlacher O, Nikitin F, Garessus S, Magdeldin S, Kinoshita N, Fujinaka H, Yaoita E, Hasegawa M, Lisacek F, Yamamoto T.

Proteomics. 2015 Aug;15(15):2568-79. doi: 10.1002/pmic.201400454. Epub 2015 May 3.

PMID:
25825003
12.

Quantitative proteomic analysis of formalin-fixed and paraffin-embedded nasopharyngeal carcinoma using iTRAQ labeling, two-dimensional liquid chromatography, and tandem mass spectrometry.

Xiao Z, Li G, Chen Y, Li M, Peng F, Li C, Li F, Yu Y, Ouyang Y, Xiao Z, Chen Z.

J Histochem Cytochem. 2010 Jun;58(6):517-27. doi: 10.1369/jhc.2010.955526. Epub 2010 Feb 1.

13.

Precision of multiple reaction monitoring mass spectrometry analysis of formalin-fixed, paraffin-embedded tissue.

Sprung RW, Martinez MA, Carpenter KL, Ham AJ, Washington MK, Arteaga CL, Sanders ME, Liebler DC.

J Proteome Res. 2012 Jun 1;11(6):3498-505. doi: 10.1021/pr300130t. Epub 2012 May 7.

14.

Comparison of different tissue sampling methods for protein extraction from formalin-fixed and paraffin-embedded tissue specimens.

Gräntzdörffer I, Yumlu S, Gioeva Z, von Wasielewski R, Ebert MP, Röcken C.

Exp Mol Pathol. 2010 Feb;88(1):190-6. doi: 10.1016/j.yexmp.2009.09.009. Epub 2009 Sep 24.

PMID:
19782068
15.

Formalin-fixed paraffin-embedded (FFPE) proteome analysis using gel-free and gel-based proteomics.

Azimzadeh O, Barjaktarovic Z, Aubele M, Calzada-Wack J, Sarioglu H, Atkinson MJ, Tapio S.

J Proteome Res. 2010 Sep 3;9(9):4710-20. doi: 10.1021/pr1004168.

PMID:
20604508
16.

Complete solubilization of formalin-fixed, paraffin-embedded tissue may improve proteomic studies.

Shi SR, Taylor CR, Fowler CB, Mason JT.

Proteomics Clin Appl. 2013 Apr;7(3-4):264-72. doi: 10.1002/prca.201200031. Epub 2013 Mar 6. Review.

17.

Use of formalin-fixed, paraffin-embedded tissue for proteomic biomarker discovery.

Krizman DB, Burrows J.

Methods Mol Biol. 2013;1002:85-92. doi: 10.1007/978-1-62703-360-2_7.

PMID:
23625396
18.

Global gene expression profiling of formalin-fixed paraffin-embedded tumor samples: a comparison to snap-frozen material using oligonucleotide microarrays.

Frank M, Döring C, Metzler D, Eckerle S, Hansmann ML.

Virchows Arch. 2007 Jun;450(6):699-711. Epub 2007 May 4.

PMID:
17479285
19.

A proteomic comparison of formalin-fixed paraffin-embedded pancreatic tissue from autoimmune pancreatitis, chronic pancreatitis, and pancreatic cancer.

Paulo JA, Kadiyala V, Brizard S, Banks PA, Steen H, Conwell DL.

JOP. 2013 Jul 10;14(4):405-14. doi: 10.6092/1590-8577/1508.

20.

Identification of proteins from formalin-fixed paraffin-embedded cells by LC-MS/MS.

Crockett DK, Lin Z, Vaughn CP, Lim MS, Elenitoba-Johnson KS.

Lab Invest. 2005 Nov;85(11):1405-15.

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