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Items: 1 to 20 of 124

1.

A fused lasso latent feature model for analyzing multi-sample aCGH data.

Nowak G, Hastie T, Pollack JR, Tibshirani R.

Biostatistics. 2011 Oct;12(4):776-91. doi: 10.1093/biostatistics/kxr012. Epub 2011 Jun 3.

2.

A multi-sample based method for identifying common CNVs in normal human genomic structure using high-resolution aCGH data.

Park C, Ahn J, Yoon Y, Park S.

PLoS One. 2011;6(10):e26975. doi: 10.1371/journal.pone.0026975. Epub 2011 Oct 31.

3.

A continuous-index hidden Markov jump process for modeling DNA copy number data.

Stjernqvist S, Rydén T.

Biostatistics. 2009 Oct;10(4):773-8. doi: 10.1093/biostatistics/kxp030. Epub 2009 Jul 23.

4.

Multisample aCGH data analysis via total variation and spectral regularization.

Zhou X, Yang C, Wan X, Zhao H, Yu W.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Jan-Feb;10(1):230-5. doi: 10.1109/TCBB.2012.166.

5.
6.

Identification of differential aberrations in multiple-sample array CGH studies.

Wang HJ, Hu J.

Biometrics. 2011 Jun;67(2):353-62. doi: 10.1111/j.1541-0420.2010.01457.x. Epub 2010 Jul 9.

7.

CoNVEX: copy number variation estimation in exome sequencing data using HMM.

Amarasinghe KC, Li J, Halgamuge SK.

BMC Bioinformatics. 2013;14 Suppl 2:S2. doi: 10.1186/1471-2105-14-S2-S2. Epub 2013 Jan 21.

8.

Landscape of somatic allelic imbalances and copy number alterations in HER2-amplified breast cancer.

Staaf J, Jönsson G, Ringnér M, Baldetorp B, Borg A.

Breast Cancer Res. 2011;13(6):R129. doi: 10.1186/bcr3075. Epub 2011 Dec 14.

9.

A robust penalized method for the analysis of noisy DNA copy number data.

Gao X, Huang J.

BMC Genomics. 2010 Sep 25;11:517. doi: 10.1186/1471-2164-11-517.

10.

Classification of array CGH data using smoothed logistic regression model.

Huang J, Salim A, Lei K, O'Sullivan K, Pawitan Y.

Stat Med. 2009 Dec 30;28(30):3798-810. doi: 10.1002/sim.3753.

PMID:
19856275
11.

Identification of significant regional genetic variations using continuous CNV values in aCGH data.

Kim KY, Lee GY, Kim J, Jeung HC, Chung HC, Rha SY.

Genomics. 2009 Nov;94(5):317-23. doi: 10.1016/j.ygeno.2009.08.006. Epub 2009 Aug 19.

12.

Genomic change of chromosome 8 predicts the response to taxane-based neoadjuvant chemotherapy in node-positive breast cancer.

Han S, Park K, Shin E, Kim HJ, Kim JY, Kim JY, Gwak G.

Oncol Rep. 2010 Jul;24(1):121-8.

PMID:
20514452
13.

Breaking the waves: improved detection of copy number variation from microarray-based comparative genomic hybridization.

Marioni JC, Thorne NP, Valsesia A, Fitzgerald T, Redon R, Fiegler H, Andrews TD, Stranger BE, Lynch AG, Dermitzakis ET, Carter NP, Tavaré S, Hurles ME.

Genome Biol. 2007;8(10):R228.

14.

Genome-wide copy number analysis in primary breast cancer.

Ueno T, Emi M, Sato H, Ito N, Muta M, Kuroi K, Toi M.

Expert Opin Ther Targets. 2012 Mar;16 Suppl 1:S31-5. doi: 10.1517/14728222.2011.636739. Epub 2012 Feb 8. Review.

PMID:
22313367
15.

Piecewise-constant and low-rank approximation for identification of recurrent copy number variations.

Zhou X, Liu J, Wan X, Yu W.

Bioinformatics. 2014 Jul 15;30(14):1943-9. doi: 10.1093/bioinformatics/btu131. Epub 2014 Mar 17.

16.

Comparative study of exome copy number variation estimation tools using array comparative genomic hybridization as control.

Guo Y, Sheng Q, Samuels DC, Lehmann B, Bauer JA, Pietenpol J, Shyr Y.

Biomed Res Int. 2013;2013:915636. doi: 10.1155/2013/915636. Epub 2013 Nov 4.

17.

A shifting level model algorithm that identifies aberrations in array-CGH data.

Magi A, Benelli M, Marseglia G, Nannetti G, Scordo MR, Torricelli F.

Biostatistics. 2010 Apr;11(2):265-80. doi: 10.1093/biostatistics/kxp051. Epub 2009 Nov 30.

18.

Multiple samples aCGH analysis for rare CNVs detection.

Sykulski M, Gambin T, Bartnik M, Derwińska K, Wiśniowiecka-Kowalnik B, Stankiewicz P, Gambin A.

J Clin Bioinforma. 2013 Jun 11;3(1):12. doi: 10.1186/2043-9113-3-12.

19.

Assessing the significance of conserved genomic aberrations using high resolution genomic microarrays.

Guttman M, Mies C, Dudycz-Sulicz K, Diskin SJ, Baldwin DA, Stoeckert CJ Jr, Grant GR.

PLoS Genet. 2007 Aug;3(8):e143.

20.

Genome-wide mapping of copy number variation in humans: comparative analysis of high resolution array platforms.

Haraksingh RR, Abyzov A, Gerstein M, Urban AE, Snyder M.

PLoS One. 2011;6(11):e27859. doi: 10.1371/journal.pone.0027859. Epub 2011 Nov 30.

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