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Results: 1 to 20 of 79

1.

An expanded protein-protein interaction network in Bacillus subtilis reveals a group of hubs: Exploration by an integrative approach.

Marchadier E, Carballido-López R, Brinster S, Fabret C, Mervelet P, Bessières P, Noirot-Gros MF, Fromion V, Noirot P.

Proteomics. 2011 Aug;11(15):2981-91. doi: 10.1002/pmic.201000791. Epub 2011 May 31.

PMID:
21630458
[PubMed - indexed for MEDLINE]
2.

Stratus not altocumulus: a new view of the yeast protein interaction network.

Batada NN, Reguly T, Breitkreutz A, Boucher L, Breitkreutz BJ, Hurst LD, Tyers M.

PLoS Biol. 2006 Oct;4(10):e317.

PMID:
16984220
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Identification of network topological units coordinating the global expression response to glucose in Bacillus subtilis and its comparison to Escherichia coli.

Vázquez CD, Freyre-González JA, Gosset G, Loza JA, Gutiérrez-Ríos RM.

BMC Microbiol. 2009 Aug 24;9:176. doi: 10.1186/1471-2180-9-176.

PMID:
19703276
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Systematic localisation of proteins fused to the green fluorescent protein in Bacillus subtilis: identification of new proteins at the DNA replication factory.

Meile JC, Wu LJ, Ehrlich SD, Errington J, Noirot P.

Proteomics. 2006 Apr;6(7):2135-46.

PMID:
16479537
[PubMed - indexed for MEDLINE]
5.

Identification of functional hubs and modules by converting interactome networks into hierarchical ordering of proteins.

Cho YR, Zhang A.

BMC Bioinformatics. 2010 Apr 29;11 Suppl 3:S3. doi: 10.1186/1471-2105-11-S3-S3.

PMID:
20438650
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

An expanded view of bacterial DNA replication.

Noirot-Gros MF, Dervyn E, Wu LJ, Mervelet P, Errington J, Ehrlich SD, Noirot P.

Proc Natl Acad Sci U S A. 2002 Jun 11;99(12):8342-7.

PMID:
12060778
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

A copula method for modeling directional dependence of genes.

Kim JM, Jung YS, Sungur EA, Han KH, Park C, Sohn I.

BMC Bioinformatics. 2008 May 1;9:225. doi: 10.1186/1471-2105-9-225.

PMID:
18447957
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Features analysis for identification of date and party hubs in protein interaction network of Saccharomyces Cerevisiae.

Mirzarezaee M, Araabi BN, Sadeghi M.

BMC Syst Biol. 2010 Dec 19;4:172. doi: 10.1186/1752-0509-4-172.

PMID:
21167069
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Network legos: building blocks of cellular wiring diagrams.

Murali TM, Rivera CG.

J Comput Biol. 2008 Sep;15(7):829-44. doi: 10.1089/cmb.2007.0139.

PMID:
18707557
[PubMed - indexed for MEDLINE]
10.

DnaD protein of Bacillus subtilis interacts with DnaA, the initiator protein of replication.

Ishigo-Oka D, Ogasawara N, Moriya S.

J Bacteriol. 2001 Mar;183(6):2148-50.

PMID:
11222620
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The Bacillus subtilis spore coat protein interaction network.

Kim H, Hahn M, Grabowski P, McPherson DC, Otte MM, Wang R, Ferguson CC, Eichenberger P, Driks A.

Mol Microbiol. 2006 Jan;59(2):487-502.

PMID:
16390444
[PubMed - indexed for MEDLINE]
12.

Artificial septal targeting of Bacillus subtilis cell division proteins in Escherichia coli: an interspecies approach to the study of protein-protein interactions in multiprotein complexes.

Robichon C, King GF, Goehring NW, Beckwith J.

J Bacteriol. 2008 Sep;190(18):6048-59. doi: 10.1128/JB.00462-08. Epub 2008 Jul 11.

PMID:
18621900
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

SPiD: a subtilis protein interaction database.

Hoebeke M, Chiapello H, Noirot P, Bessières P.

Bioinformatics. 2001 Dec;17(12):1209-12.

PMID:
11751229
[PubMed - indexed for MEDLINE]
Free Article
14.

Genes controlled by the essential YycG/YycF two-component system of Bacillus subtilis revealed through a novel hybrid regulator approach.

Howell A, Dubrac S, Andersen KK, Noone D, Fert J, Msadek T, Devine K.

Mol Microbiol. 2003 Sep;49(6):1639-55.

PMID:
12950927
[PubMed - indexed for MEDLINE]
15.

Global protein-protein interaction network in the human pathogen Mycobacterium tuberculosis H37Rv.

Wang Y, Cui T, Zhang C, Yang M, Huang Y, Li W, Zhang L, Gao C, He Y, Li Y, Huang F, Zeng J, Huang C, Yang Q, Tian Y, Zhao C, Chen H, Zhang H, He ZG.

J Proteome Res. 2010 Dec 3;9(12):6665-77. doi: 10.1021/pr100808n. Epub 2010 Nov 10.

PMID:
20973567
[PubMed - indexed for MEDLINE]
16.

Interaction networks: from protein functions to drug discovery. A review.

Chautard E, Thierry-Mieg N, Ricard-Blum S.

Pathol Biol (Paris). 2009 Jun;57(4):324-33. doi: 10.1016/j.patbio.2008.10.004. Epub 2008 Dec 13. Review.

PMID:
19070972
[PubMed - indexed for MEDLINE]
17.

The transcription regulator RbsR represents a novel interaction partner of the phosphoprotein HPr-Ser46-P in Bacillus subtilis.

Müller W, Horstmann N, Hillen W, Sticht H.

FEBS J. 2006 Mar;273(6):1251-61.

PMID:
16519689
[PubMed - indexed for MEDLINE]
18.

AVID: an integrative framework for discovering functional relationships among proteins.

Jiang T, Keating AE.

BMC Bioinformatics. 2005 Jun 1;6:136.

PMID:
15929793
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

The Cartographers toolbox: building bigger and better human protein interaction networks.

Sanderson CM.

Brief Funct Genomic Proteomic. 2009 Jan;8(1):1-11. doi: 10.1093/bfgp/elp003. Epub 2009 Mar 12. Review.

PMID:
19282470
[PubMed - indexed for MEDLINE]
Free Article
20.

The topology of the bacterial co-conserved protein network and its implications for predicting protein function.

Karimpour-Fard A, Leach SM, Hunter LE, Gill RT.

BMC Genomics. 2008 Jun 30;9:313. doi: 10.1186/1471-2164-9-313.

PMID:
18590549
[PubMed - indexed for MEDLINE]
Free PMC Article

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