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Results: 1 to 20 of 84

1.

A reduced representation approach to population genetic analyses and applications to human evolution.

Luca F, Hudson RR, Witonsky DB, Di Rienzo A.

Genome Res. 2011 Jul;21(7):1087-98. doi: 10.1101/gr.119792.110. Epub 2011 May 31.

PMID:
21628451
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

A probabilistic method for the detection and genotyping of small indels from population-scale sequence data.

Bansal V, Libiger O.

Bioinformatics. 2011 Aug 1;27(15):2047-53. doi: 10.1093/bioinformatics/btr344. Epub 2011 Jun 7.

PMID:
21653520
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

SNP detection for massively parallel whole-genome resequencing.

Li R, Li Y, Fang X, Yang H, Wang J, Kristiansen K, Wang J.

Genome Res. 2009 Jun;19(6):1124-32. doi: 10.1101/gr.088013.108. Epub 2009 May 6.

PMID:
19420381
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

ENGINES: exploring single nucleotide variation in entire human genomes.

Amigo J, Salas A, Phillips C.

BMC Bioinformatics. 2011 Apr 19;12:105. doi: 10.1186/1471-2105-12-105.

PMID:
21504571
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Population genetic inference from resequencing data.

Jiang R, Tavaré S, Marjoram P.

Genetics. 2009 Jan;181(1):187-97. doi: 10.1534/genetics.107.080630. Epub 2008 Nov 3. Erratum in: Genetics. 2012 Feb;190(2):829-30.

PMID:
18984575
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Coverage-based consensus calling (CbCC) of short sequence reads and comparison of CbCC results to identify SNPs in chickpea (Cicer arietinum; Fabaceae), a crop species without a reference genome.

Azam S, Thakur V, Ruperao P, Shah T, Balaji J, Amindala B, Farmer AD, Studholme DJ, May GD, Edwards D, Jones JD, Varshney RK.

Am J Bot. 2012 Feb;99(2):186-92. doi: 10.3732/ajb.1100419. Epub 2012 Feb 1.

PMID:
22301893
[PubMed - indexed for MEDLINE]
Free Article
7.

Expanding whole exome resequencing into non-human primates.

Vallender EJ.

Genome Biol. 2011 Sep 14;12(9):R87. doi: 10.1186/gb-2011-12-9-r87.

PMID:
21917143
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Characterizing and interpreting genetic variation from personal genome sequencing.

Johansson AC, Feuk L.

Methods Mol Biol. 2012;838:343-67. doi: 10.1007/978-1-61779-507-7_17.

PMID:
22228021
[PubMed - indexed for MEDLINE]
9.

Accurate detection and genotyping of SNPs utilizing population sequencing data.

Bansal V, Harismendy O, Tewhey R, Murray SS, Schork NJ, Topol EJ, Frazer KA.

Genome Res. 2010 Apr;20(4):537-45. doi: 10.1101/gr.100040.109. Epub 2010 Feb 11.

PMID:
20150320
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Large scale single nucleotide polymorphism discovery in unsequenced genomes using second generation high throughput sequencing technology: applied to turkey.

Kerstens HH, Crooijmans RP, Veenendaal A, Dibbits BW, Chin-A-Woeng TF, den Dunnen JT, Groenen MA.

BMC Genomics. 2009 Oct 16;10:479. doi: 10.1186/1471-2164-10-479.

PMID:
19835600
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

RADSeq: next-generation population genetics.

Davey JW, Blaxter ML.

Brief Funct Genomics. 2010 Dec;9(5-6):416-23. doi: 10.1093/bfgp/elq031. Erratum in: Brief Funct Genomics. 2011 Mar;10(2):108. Davey, John L [corrected to Davey, John W]; Blaxter, Mark W [corrected to Blaxter, Mark L].

PMID:
21266344
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A whole genome long-range haplotype (WGLRH) test for detecting imprints of positive selection in human populations.

Zhang C, Bailey DK, Awad T, Liu G, Xing G, Cao M, Valmeekam V, Retief J, Matsuzaki H, Taub M, Seielstad M, Kennedy GC.

Bioinformatics. 2006 Sep 1;22(17):2122-8. Epub 2006 Jul 15.

PMID:
16845142
[PubMed - indexed for MEDLINE]
Free Article
13.

Genome wide SNP discovery, analysis and evaluation in mallard (Anas platyrhynchos).

Kraus RH, Kerstens HH, Van Hooft P, Crooijmans RP, Van Der Poel JJ, Elmberg J, Vignal A, Huang Y, Li N, Prins HH, Groenen MA.

BMC Genomics. 2011 Mar 16;12:150. doi: 10.1186/1471-2164-12-150.

PMID:
21410945
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Inference of population mutation rate and detection of segregating sites from next-generation sequence data.

Kang CJ, Marjoram P.

Genetics. 2011 Oct;189(2):595-605. doi: 10.1534/genetics.111.130898. Epub 2011 Aug 11.

PMID:
21840859
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Bayesian inference of ancient human demography from individual genome sequences.

Gronau I, Hubisz MJ, Gulko B, Danko CG, Siepel A.

Nat Genet. 2011 Sep 18;43(10):1031-4. doi: 10.1038/ng.937.

PMID:
21926973
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Huvariome: a web server resource of whole genome next-generation sequencing allelic frequencies to aid in pathological candidate gene selection.

Stubbs A, McClellan EA, Horsman S, Hiltemann SD, Palli I, Nouwens S, Koning AH, Hoogland F, Reumers J, Heijsman D, Swagemakers S, Kremer A, Meijerink J, Lambrechts D, van der Spek PJ.

J Clin Bioinforma. 2012 Nov 19;2(1):19. doi: 10.1186/2043-9113-2-19.

PMID:
23164068
[PubMed]
Free PMC Article
17.

The complete genome of an individual by massively parallel DNA sequencing.

Wheeler DA, Srinivasan M, Egholm M, Shen Y, Chen L, McGuire A, He W, Chen YJ, Makhijani V, Roth GT, Gomes X, Tartaro K, Niazi F, Turcotte CL, Irzyk GP, Lupski JR, Chinault C, Song XZ, Liu Y, Yuan Y, Nazareth L, Qin X, Muzny DM, Margulies M, Weinstock GM, Gibbs RA, Rothberg JM.

Nature. 2008 Apr 17;452(7189):872-6. doi: 10.1038/nature06884.

PMID:
18421352
[PubMed - indexed for MEDLINE]
18.

SNP@Evolution: a hierarchical database of positive selection on the human genome.

Cheng F, Chen W, Richards E, Deng L, Zeng C.

BMC Evol Biol. 2009 Sep 5;9:221. doi: 10.1186/1471-2148-9-221.

PMID:
19732458
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

A framework for variation discovery and genotyping using next-generation DNA sequencing data.

DePristo MA, Banks E, Poplin R, Garimella KV, Maguire JR, Hartl C, Philippakis AA, del Angel G, Rivas MA, Hanna M, McKenna A, Fennell TJ, Kernytsky AM, Sivachenko AY, Cibulskis K, Gabriel SB, Altshuler D, Daly MJ.

Nat Genet. 2011 May;43(5):491-8. doi: 10.1038/ng.806. Epub 2011 Apr 10.

PMID:
21478889
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Discovery and genotyping of genome structural polymorphism by sequencing on a population scale.

Handsaker RE, Korn JM, Nemesh J, McCarroll SA.

Nat Genet. 2011 Mar;43(3):269-76. doi: 10.1038/ng.768. Epub 2011 Feb 13.

PMID:
21317889
[PubMed - indexed for MEDLINE]

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