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Items: 1 to 20 of 136

1.

A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure.

Zuccolo A, Bowers JE, Estill JC, Xiong Z, Luo M, Sebastian A, Goicoechea JL, Collura K, Yu Y, Jiao Y, Duarte J, Tang H, Ayyampalayam S, Rounsley S, Kudrna D, Paterson AH, Pires JC, Chanderbali A, Soltis DE, Chamala S, Barbazuk B, Soltis PS, Albert VA, Ma H, Mandoli D, Banks J, Carlson JE, Tomkins J, dePamphilis CW, Wing RA, Leebens-Mack J.

Genome Biol. 2011;12(5):R48. doi: 10.1186/gb-2011-12-5-r48. Epub 2011 May 27.

2.

The Amborella genome and the evolution of flowering plants.

Amborella Genome Project.

Science. 2013 Dec 20;342(6165):1241089. doi: 10.1126/science.1241089.

3.

Genomic tools development for Aquilegia: construction of a BAC-based physical map.

Fang GC, Blackmon BP, Henry DC, Staton ME, Saski CA, Hodges SA, Tomkins JP, Luo H.

BMC Genomics. 2010 Nov 8;11:621. doi: 10.1186/1471-2164-11-621.

4.

Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes.

Staton M, Zhebentyayeva T, Olukolu B, Fang GC, Nelson D, Carlson JE, Abbott AG.

BMC Genomics. 2015 Oct 5;16:744. doi: 10.1186/s12864-015-1942-1.

5.

Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels.

Duarte JM, Wall PK, Edger PP, Landherr LL, Ma H, Pires JC, Leebens-Mack J, dePamphilis CW.

BMC Evol Biol. 2010 Feb 24;10:61. doi: 10.1186/1471-2148-10-61.

6.

Identifying the basal angiosperm node in chloroplast genome phylogenies: sampling one's way out of the Felsenstein zone.

Leebens-Mack J, Raubeson LA, Cui L, Kuehl JV, Fourcade MH, Chumley TW, Boore JL, Jansen RK, depamphilis CW.

Mol Biol Evol. 2005 Oct;22(10):1948-63. Epub 2005 Jun 8.

7.

Analysis of the Amborella trichopoda chloroplast genome sequence suggests that amborella is not a basal angiosperm.

Goremykin VV, Hirsch-Ernst KI, Wolfl S, Hellwig FH.

Mol Biol Evol. 2003 Sep;20(9):1499-505. Epub 2003 Jun 27.

8.
9.

The Complete Moss Mitochondrial Genome in the Angiosperm Amborella Is a Chimera Derived from Two Moss Whole-Genome Transfers.

Taylor ZN, Rice DW, Palmer JD.

PLoS One. 2015 Nov 30;10(11):e0137532. doi: 10.1371/journal.pone.0137532. eCollection 2015.

10.
12.

The Amborella genome: an evolutionary reference for plant biology.

Soltis DE, Albert VA, Leebens-Mack J, Palmer JD, Wing RA, dePamphilis CW, Ma H, Carlson JE, Altman N, Kim S, Wall PK, Zuccolo A, Soltis PS.

Genome Biol. 2008;9(3):402. doi: 10.1186/gb-2008-9-3-402. Epub 2008 Mar 10.

13.

Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.

Jung S, Main D, Staton M, Cho I, Zhebentyayeva T, Arús P, Abbott A.

BMC Genomics. 2006 Apr 14;7:81.

14.

Another look at the root of the angiosperms reveals a familiar tale.

Drew BT, Ruhfel BR, Smith SA, Moore MJ, Briggs BG, Gitzendanner MA, Soltis PS, Soltis DE.

Syst Biol. 2014 May;63(3):368-82. doi: 10.1093/sysbio/syt108. Epub 2014 Jan 3.

PMID:
24391149
15.

Assembly and validation of the genome of the nonmodel basal angiosperm Amborella.

Chamala S, Chanderbali AS, Der JP, Lan T, Walts B, Albert VA, dePamphilis CW, Leebens-Mack J, Rounsley S, Schuster SC, Wing RA, Xiao N, Moore R, Soltis PS, Soltis DE, Barbazuk WB.

Science. 2013 Dec 20;342(6165):1516-7. doi: 10.1126/science.1241130.

PMID:
24357320
16.

Phylogeography and niche modelling of the relict plant Amborella trichopoda (Amborellaceae) reveal multiple Pleistocene refugia in New Caledonia.

Poncet V, Munoz F, Munzinger J, Pillon Y, Gomez C, Couderc M, Tranchant-Dubreuil C, Hamon S, de Kochko A.

Mol Ecol. 2013 Dec;22(24):6163-78. doi: 10.1111/mec.12554. Epub 2013 Nov 11.

PMID:
24118476
17.
18.

Comparative sequence analyses indicate that Coffea (Asterids) and Vitis (Rosids) derive from the same paleo-hexaploid ancestral genome.

Cenci A, Combes MC, Lashermes P.

Mol Genet Genomics. 2010 May;283(5):493-501. doi: 10.1007/s00438-010-0534-7. Epub 2010 Apr 2.

PMID:
20361338
19.

Independent and combined analyses of sequences from all three genomic compartments converge on the root of flowering plant phylogeny.

Barkman TJ, Chenery G, McNeal JR, Lyons-Weiler J, Ellisens WJ, Moore G, Wolfe AD, dePamphilis CW.

Proc Natl Acad Sci U S A. 2000 Nov 21;97(24):13166-71.

20.

The Amborella vacuolar processing enzyme family.

Poncet V, Scutt C, Tournebize R, Villegente M, Cueff G, Rajjou L, Balliau T, Zivy M, Fogliani B, Job C, de Kochko A, Sarramegna-Burtet V, Job D.

Front Plant Sci. 2015 Aug 21;6:618. doi: 10.3389/fpls.2015.00618. eCollection 2015.

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