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Results: 1 to 20 of 119

1.

Predicting drug side-effect profiles: a chemical fragment-based approach.

Pauwels E, Stoven V, Yamanishi Y.

BMC Bioinformatics. 2011 May 18;12:169. doi: 10.1186/1471-2105-12-169.

PMID:
21586169
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Drug side-effect prediction based on the integration of chemical and biological spaces.

Yamanishi Y, Pauwels E, Kotera M.

J Chem Inf Model. 2012 Dec 21;52(12):3284-92. doi: 10.1021/ci2005548. Epub 2012 Dec 4.

PMID:
23157436
[PubMed - indexed for MEDLINE]
3.

Analysis of pharmacology data and the prediction of adverse drug reactions and off-target effects from chemical structure.

Bender A, Scheiber J, Glick M, Davies JW, Azzaoui K, Hamon J, Urban L, Whitebread S, Jenkins JL.

ChemMedChem. 2007 Jun;2(6):861-73.

PMID:
17477341
[PubMed - indexed for MEDLINE]
4.

Relating drug-protein interaction network with drug side effects.

Mizutani S, Pauwels E, Stoven V, Goto S, Yamanishi Y.

Bioinformatics. 2012 Sep 15;28(18):i522-i528. doi: 10.1093/bioinformatics/bts383.

PMID:
22962476
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

[Development of antituberculous drugs: current status and future prospects].

Tomioka H, Namba K.

Kekkaku. 2006 Dec;81(12):753-74. Review. Japanese.

PMID:
17240921
[PubMed - indexed for MEDLINE]
6.

DrugBank: a comprehensive resource for in silico drug discovery and exploration.

Wishart DS, Knox C, Guo AC, Shrivastava S, Hassanali M, Stothard P, Chang Z, Woolsey J.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D668-72.

PMID:
16381955
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Prediction methods and databases within chemoinformatics: emphasis on drugs and drug candidates.

Jónsdóttir SO, Jørgensen FS, Brunak S.

Bioinformatics. 2005 May 15;21(10):2145-60. Epub 2005 Feb 15. Review.

PMID:
15713739
[PubMed - indexed for MEDLINE]
Free Article
8.

An algorithmic framework for predicting side effects of drugs.

Atias N, Sharan R.

J Comput Biol. 2011 Mar;18(3):207-18. doi: 10.1089/cmb.2010.0255.

PMID:
21385029
[PubMed - indexed for MEDLINE]
9.

Building the process-drug-side effect network to discover the relationship between biological processes and side effects.

Lee S, Lee KH, Song M, Lee D.

BMC Bioinformatics. 2011 Mar 29;12 Suppl 2:S2. doi: 10.1186/1471-2105-12-S2-S2.

PMID:
21489221
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Predicting ADME properties and side effects: the BioPrint approach.

Krejsa CM, Horvath D, Rogalski SL, Penzotti JE, Mao B, Barbosa F, Migeon JC.

Curr Opin Drug Discov Devel. 2003 Jul;6(4):470-80. Review.

PMID:
12951810
[PubMed - indexed for MEDLINE]
11.

Predicting adverse side effects of drugs.

Huang LC, Wu X, Chen JY.

BMC Genomics. 2011 Dec 23;12 Suppl 5:S11. doi: 10.1186/1471-2164-12-S5-S11. Epub 2011 Dec 23.

PMID:
22369493
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Predicting drugs side effects based on chemical-chemical interactions and protein-chemical interactions.

Chen L, Huang T, Zhang J, Zheng MY, Feng KY, Cai YD, Chou KC.

Biomed Res Int. 2013;2013:485034. doi: 10.1155/2013/485034. Epub 2013 Sep 4.

PMID:
24078917
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Guidelines, editors, pharma and the biological paradigm shift.

Singh AR, Singh SA.

Mens Sana Monogr. 2007 Jan;5(1):27-30. doi: 10.4103/0973-1229.32176.

PMID:
22058616
[PubMed]
Free PMC Article
14.

The relationship between rational drug design and drug side effects.

Wang J, Li ZX, Qiu CX, Wang D, Cui QH.

Brief Bioinform. 2012 May;13(3):377-82. doi: 10.1093/bib/bbr061. Epub 2011 Sep 23.

PMID:
21949217
[PubMed - indexed for MEDLINE]
Free Article
15.

Extraction and analysis of chemical modification patterns in drug development.

Shigemizu D, Araki M, Okuda S, Goto S, Kanehisa M.

J Chem Inf Model. 2009 Apr;49(4):1122-9. doi: 10.1021/ci8003804.

PMID:
19391632
[PubMed - indexed for MEDLINE]
16.

Integrative relational machine-learning for understanding drug side-effect profiles.

Bresso E, Grisoni R, Marchetti G, Karaboga AS, Souchet M, Devignes MD, Smaïl-Tabbone M.

BMC Bioinformatics. 2013 Jun 26;14:207. doi: 10.1186/1471-2105-14-207.

PMID:
23802887
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

DrugBank: a knowledgebase for drugs, drug actions and drug targets.

Wishart DS, Knox C, Guo AC, Cheng D, Shrivastava S, Tzur D, Gautam B, Hassanali M.

Nucleic Acids Res. 2008 Jan;36(Database issue):D901-6. Epub 2007 Nov 29.

PMID:
18048412
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Predicting adverse drug reaction profiles by integrating protein interaction networks with drug structures.

Huang LC, Wu X, Chen JY.

Proteomics. 2013 Jan;13(2):313-24. doi: 10.1002/pmic.201200337.

PMID:
23184540
[PubMed - indexed for MEDLINE]
19.

Extracting sets of chemical substructures and protein domains governing drug-target interactions.

Yamanishi Y, Pauwels E, Saigo H, Stoven V.

J Chem Inf Model. 2011 May 23;51(5):1183-94. doi: 10.1021/ci100476q. Epub 2011 May 5.

PMID:
21506615
[PubMed - indexed for MEDLINE]
20.

Discovering patterns in drug-protein interactions based on their fingerprints.

Luo W, Chan KC.

BMC Bioinformatics. 2012 Jun 11;13 Suppl 9:S4. doi: 10.1186/1471-2105-13-S9-S4.

PMID:
22901089
[PubMed - indexed for MEDLINE]
Free PMC Article

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