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Items: 1 to 20 of 98

1.

SNPsyn: detection and exploration of SNP-SNP interactions.

Curk T, Rot G, Zupan B.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W444-9. doi: 10.1093/nar/gkr321. Epub 2011 May 16.

2.

SNP-based pathway enrichment analysis for genome-wide association studies.

Weng L, Macciardi F, Subramanian A, Guffanti G, Potkin SG, Yu Z, Xie X.

BMC Bioinformatics. 2011 Apr 15;12:99. doi: 10.1186/1471-2105-12-99.

3.

i-GSEA4GWAS: a web server for identification of pathways/gene sets associated with traits by applying an improved gene set enrichment analysis to genome-wide association study.

Zhang K, Cui S, Chang S, Zhang L, Wang J.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W90-5. doi: 10.1093/nar/gkq324. Epub 2010 Apr 30.

4.

QualitySNPng: a user-friendly SNP detection and visualization tool.

Nijveen H, van Kaauwen M, Esselink DG, Hoegen B, Vosman B.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W587-90. doi: 10.1093/nar/gkt333. Epub 2013 Apr 30.

5.

SNPranker 2.0: a gene-centric data mining tool for diseases associated SNP prioritization in GWAS.

Merelli I, Calabria A, Cozzi P, Viti F, Mosca E, Milanesi L.

BMC Bioinformatics. 2013;14 Suppl 1:S9. doi: 10.1186/1471-2105-14-S1-S9. Epub 2013 Jan 14.

6.

Heterogeneous computing architecture for fast detection of SNP-SNP interactions.

Sluga D, Curk T, Zupan B, Lotric U.

BMC Bioinformatics. 2014 Jun 25;15:216. doi: 10.1186/1471-2105-15-216.

7.

SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects.

Dereeper A, Nicolas S, Le Cunff L, Bacilieri R, Doligez A, Peros JP, Ruiz M, This P.

BMC Bioinformatics. 2011 May 5;12:134. doi: 10.1186/1471-2105-12-134.

8.

SNP-VISTA: an interactive SNP visualization tool.

Shah N, Teplitsky MV, Minovitsky S, Pennacchio LA, Hugenholtz P, Hamann B, Dubchak IL.

BMC Bioinformatics. 2005 Dec 8;6:292.

9.

SynTView - an interactive multi-view genome browser for next-generation comparative microorganism genomics.

Lechat P, Souche E, Moszer I.

BMC Bioinformatics. 2013 Sep 22;14:277. doi: 10.1186/1471-2105-14-277.

10.

SPOT: a web-based tool for using biological databases to prioritize SNPs after a genome-wide association study.

Saccone SF, Bolze R, Thomas P, Quan J, Mehta G, Deelman E, Tischfield JA, Rice JP.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W201-9. doi: 10.1093/nar/gkq513. Epub 2010 Jun 6.

11.

Snat: a SNP annotation tool for bovine by integrating various sources of genomic information.

Jiang J, Jiang L, Zhou B, Fu W, Liu JF, Zhang Q.

BMC Genet. 2011 Oct 7;12:85. doi: 10.1186/1471-2156-12-85.

12.

Genome-wide association studies pipeline (GWASpi): a desktop application for genome-wide SNP analysis and management.

Muñiz-Fernandez F, Carreño-Torres A, Morcillo-Suarez C, Navarro A.

Bioinformatics. 2011 Jul 1;27(13):1871-2. doi: 10.1093/bioinformatics/btr301. Epub 2011 May 17.

13.

SNP-PHAGE--High throughput SNP discovery pipeline.

Matukumalli LK, Grefenstette JJ, Hyten DL, Choi IY, Cregan PB, Van Tassell CP.

BMC Bioinformatics. 2006 Oct 23;7:468.

14.

SNPsFinder--a web-based application for genome-wide discovery of single nucleotide polymorphisms in microbial genomes.

Song J, Xu Y, White S, Miller KW, Wolinsky M.

Bioinformatics. 2005 May 1;21(9):2083-4. Epub 2005 Feb 3.

15.

INTERSNP: genome-wide interaction analysis guided by a priori information.

Herold C, Steffens M, Brockschmidt FF, Baur MP, Becker T.

Bioinformatics. 2009 Dec 15;25(24):3275-81. doi: 10.1093/bioinformatics/btp596. Epub 2009 Oct 16.

16.

PANOGA: a web server for identification of SNP-targeted pathways from genome-wide association study data.

Bakir-Gungor B, Egemen E, Sezerman OU.

Bioinformatics. 2014 May 1;30(9):1287-9. doi: 10.1093/bioinformatics/btt743. Epub 2014 Jan 11.

17.

Shrunken methodology to genome-wide SNPs selection and construction of SNPs networks.

Liu Y, Ng M.

BMC Syst Biol. 2010 Sep 13;4 Suppl 2:S5. doi: 10.1186/1752-0509-4-S2-S5.

18.

GLIDERS--a web-based search engine for genome-wide linkage disequilibrium between HapMap SNPs.

Lawrence R, Day-Williams AG, Mott R, Broxholme J, Cardon LR, Zeggini E.

BMC Bioinformatics. 2009 Oct 31;10:367. doi: 10.1186/1471-2105-10-367.

19.

ICSNPathway: identify candidate causal SNPs and pathways from genome-wide association study by one analytical framework.

Zhang K, Chang S, Cui S, Guo L, Zhang L, Wang J.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W437-43. doi: 10.1093/nar/gkr391. Epub 2011 May 27.

20.

LDGIdb: a database of gene interactions inferred from long-range strong linkage disequilibrium between pairs of SNPs.

Wang MC, Chen FC, Chen YZ, Huang YT, Chuang TJ.

BMC Res Notes. 2012 May 2;5:212. doi: 10.1186/1756-0500-5-212.

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