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Items: 1 to 20 of 79

1.

Preprocessing differential methylation hybridization microarray data.

Sun S, Huang YW, Yan PS, Huang TH, Lin S.

BioData Min. 2011 May 16;4:13. doi: 10.1186/1756-0381-4-13.

2.

Two-stage normalization using background intensities in cDNA microarray data.

Yoon D, Yi SG, Kim JH, Park T.

BMC Bioinformatics. 2004 Jul 21;5:97.

3.

Identifying hypermethylated CpG islands using a quantile regression model.

Sun S, Chen Z, Yan PS, Huang YW, Huang TH, Lin S.

BMC Bioinformatics. 2011 Feb 15;12:54. doi: 10.1186/1471-2105-12-54.

4.

An evaluation of two-channel ChIP-on-chip and DNA methylation microarray normalization strategies.

Adriaens ME, Jaillard M, Eijssen LM, Mayer CD, Evelo CT.

BMC Genomics. 2012 Jan 25;13:42. doi: 10.1186/1471-2164-13-42.

5.

Optimized LOWESS normalization parameter selection for DNA microarray data.

Berger JA, Hautaniemi S, Järvinen AK, Edgren H, Mitra SK, Astola J.

BMC Bioinformatics. 2004 Dec 9;5:194.

6.

Pre-processing Agilent microarray data.

Zahurak M, Parmigiani G, Yu W, Scharpf RB, Berman D, Schaeffer E, Shabbeer S, Cope L.

BMC Bioinformatics. 2007 May 1;8:142.

7.

Normalization of cDNA microarray data.

Smyth GK, Speed T.

Methods. 2003 Dec;31(4):265-73.

PMID:
14597310
8.

Supervised Lowess normalization of comparative genome hybridization data--application to lactococcal strain comparisons.

van Hijum SA, Baerends RJ, Zomer AL, Karsens HA, Martin-Requena V, Trelles O, Kok J, Kuipers OP.

BMC Bioinformatics. 2008 Feb 11;9:93. doi: 10.1186/1471-2105-9-93.

9.

Using generalized procrustes analysis (GPA) for normalization of cDNA microarray data.

Xiong H, Zhang D, Martyniuk CJ, Trudeau VL, Xia X.

BMC Bioinformatics. 2008 Jan 16;9:25. doi: 10.1186/1471-2105-9-25.

10.

Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays.

Wang Y, Barbacioru C, Hyland F, Xiao W, Hunkapiller KL, Blake J, Chan F, Gonzalez C, Zhang L, Samaha RR.

BMC Genomics. 2006 Mar 21;7:59.

11.

Novel design and controls for focused DNA microarrays: applications in quality assurance/control and normalization for the Health Canada ToxArray.

Yauk CL, Williams A, Boucher S, Berndt LM, Zhou G, Zheng JL, Rowan-Carroll A, Dong H, Lambert IB, Douglas GR, Parfett CL.

BMC Genomics. 2006 Oct 19;7:266.

12.

Comparison of different normalization assumptions for analyses of DNA methylation data from the cancer genome.

Wang D, Zhang Y, Huang Y, Li P, Wang M, Wu R, Cheng L, Zhang W, Zhang Y, Li B, Wang C, Guo Z.

Gene. 2012 Sep 10;506(1):36-42. doi: 10.1016/j.gene.2012.06.075. Epub 2012 Jul 4.

PMID:
22771920
13.

Nonspecific hybridization scaling of microarray expression estimates: a physicochemical approach for chip-to-chip normalization.

Binder H, Brücker J, Burden CJ.

J Phys Chem B. 2009 Mar 5;113(9):2874-95. doi: 10.1021/jp808118m.

PMID:
19708217
14.

Differential methylation hybridization: profiling DNA methylation with a high-density CpG island microarray.

Yan PS, Potter D, Deatherage DE, Huang TH, Lin S.

Methods Mol Biol. 2009;507:89-106. doi: 10.1007/978-1-59745-522-0_8.

PMID:
18987809
15.

A comparison of normalization techniques for microRNA microarray data.

Rao Y, Lee Y, Jarjoura D, Ruppert AS, Liu CG, Hsu JC, Hagan JP.

Stat Appl Genet Mol Biol. 2008;7(1):Article22. doi: 10.2202/1544-6115.1287. Epub 2008 Jul 21.

PMID:
18673291
16.

A novel and fast normalization method for high-density arrays.

van Iterson M, Duijkers FA, Meijerink JP, Admiraal P, van Ommen GJ, Boer JM, van Noesel MM, Menezes RX.

Stat Appl Genet Mol Biol. 2012 Jul 12;11(4). pii: /j/sagmb.2012.11.issue-4/1544-6115.1753/1544-6115.1753.xml. doi: 10.1515/1544-6115.1753.

PMID:
22850064
17.

Normalization for triple-target microarray experiments.

Martin-Magniette ML, Aubert J, Bar-Hen A, Elftieh S, Magniette F, Renou JP, Daudin JJ.

BMC Bioinformatics. 2008 Apr 28;9:216. doi: 10.1186/1471-2105-9-216.

18.

Methylation-specific oligonucleotide microarray: a new potential for high-throughput methylation analysis.

Gitan RS, Shi H, Chen CM, Yan PS, Huang TH.

Genome Res. 2002 Jan;12(1):158-64.

19.

Methylation Linear Discriminant Analysis (MLDA) for identifying differentially methylated CpG islands.

Dai W, Teodoridis JM, Graham J, Zeller C, Huang TH, Yan P, Vass JK, Brown R, Paul J.

BMC Bioinformatics. 2008 Aug 8;9:337. doi: 10.1186/1471-2105-9-337.

20.

Microarray-based methylation analysis using dual-color fluorescence hybridization.

Zhou D, Qiao W, Wan Y, Lu Z.

J Biochem Biophys Methods. 2006 Mar 31;66(1-3):33-43. Epub 2006 Jan 10.

PMID:
16442635
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