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Similar articles for PubMed (Select 21572176)

1.

Physics approaches to protein interactions and gene regulation.

Nussinov R, Panchenko AR, Przytycka T.

Phys Biol. 2011 Jun;8(3):030301. doi: 10.1088/1478-3975/8/3/030301. Epub 2011 May 13. No abstract available.

PMID:
21572176
2.
3.

Character and evolution of protein-protein interfaces.

Res I, Lichtarge O.

Phys Biol. 2005 Jun;2(2):S36-43. Review.

PMID:
16204847
4.

Protein flexibility using constraints from molecular dynamics simulations.

Mamonova T, Hespenheide B, Straub R, Thorpe MF, Kurnikova M.

Phys Biol. 2005 Nov 9;2(4):S137-47.

PMID:
16280619
5.

Kinetic modelling approaches to in vivo imaging.

Phair RD, Misteli T.

Nat Rev Mol Cell Biol. 2001 Dec;2(12):898-907. Review.

PMID:
11733769
6.

Understanding stochastic simulations of the smallest genetic networks.

Schultz D, Onuchic JN, Wolynes PG.

J Chem Phys. 2007 Jun 28;126(24):245102.

PMID:
17614590
7.

Computational approaches for predicting the binding sites and understanding the recognition mechanism of protein-DNA complexes.

Gromiha MM, Nagarajan R.

Adv Protein Chem Struct Biol. 2013;91:65-99. doi: 10.1016/B978-0-12-411637-5.00003-2. Review.

PMID:
23790211
8.

From "simple" DNA-protein interactions to the macromolecular machines of gene expression.

von Hippel PH.

Annu Rev Biophys Biomol Struct. 2007;36:79-105. Review.

9.

Axis curvature and ligand induced bending in the CAP-DNA oligomers.

Dixit SB, Beveridge DL.

Biophys J. 2005 Jan;88(1):L04-6. Epub 2004 Nov 19. No abstract available.

10.

Microcanonical replica exchange molecular dynamics simulation of proteins.

Kar P, Nadler W, Hansmann UH.

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Nov;80(5 Pt 2):056703. Epub 2009 Nov 18.

PMID:
20365092
11.

Computational prediction of native protein ligand-binding and enzyme active site sequences.

Chakrabarti R, Klibanov AM, Friesner RA.

Proc Natl Acad Sci U S A. 2005 Jul 19;102(29):10153-8. Epub 2005 Jul 5.

12.

A conservation and biophysics guided stochastic approach to refining docked multimeric proteins.

Akbal-Delibas B, Haspel N.

BMC Struct Biol. 2013;13 Suppl 1:S7. doi: 10.1186/1472-6807-13-S1-S7. Epub 2013 Nov 8.

13.

EH proteins: multivalent regulators of endocytosis (and other pathways).

Miliaras NB, Wendland B.

Cell Biochem Biophys. 2004;41(2):295-318. Review.

PMID:
15475615
14.

Biomolecular interactions: essential instrumentation methods.

Messina PV, Ruso JM.

Front Biosci (Schol Ed). 2013 Jan 1;5:786-805. Review.

PMID:
23277087
15.

Biophysical characterization of intrinsically disordered proteins.

Eliezer D.

Curr Opin Struct Biol. 2009 Feb;19(1):23-30. doi: 10.1016/j.sbi.2008.12.004. Epub 2009 Jan 21. Review.

16.

Quantitative computer simulations of biomolecules: a snapshot.

Yang W, Nymeyer H, Zhou HX, Berg B, Br├╝schweiler R.

J Comput Chem. 2008 Mar;29(4):668-72.

PMID:
17708535
17.

Phenotype analysis using network motifs derived from changes in regulatory network dynamics.

Cavelier G, Anastassiou D.

Proteins. 2005 Aug 15;60(3):525-46.

PMID:
15971229
18.

Bridging biological ontologies and biosimulation: the ontology of physics for biology.

Cook DL, Mejino JL, Neal ML, Gennari JH.

AMIA Annu Symp Proc. 2008 Nov 6:136-40.

19.

Combinatorial docking approach for structure prediction of large proteins and multi-molecular assemblies.

Inbar Y, Benyamini H, Nussinov R, Wolfson HJ.

Phys Biol. 2005 Nov 9;2(4):S156-65.

PMID:
16280621
20.

Biophysical and computational fragment-based approaches to targeting protein-protein interactions: applications in structure-guided drug discovery.

Winter A, Higueruelo AP, Marsh M, Sigurdardottir A, Pitt WR, Blundell TL.

Q Rev Biophys. 2012 Nov;45(4):383-426. doi: 10.1017/S0033583512000108. Epub 2012 Sep 13. Review.

PMID:
22971516
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