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Results: 1 to 20 of 89

1.

Combining contemporary and ancient DNA in population genetic and phylogeographical studies.

Navascués M, Depaulis F, Emerson BC.

Mol Ecol Resour. 2010 Sep;10(5):760-72. doi: 10.1111/j.1755-0998.2010.02895.x. Epub 2010 Jul 8.

PMID:
21565088
[PubMed]
2.

Using phylochronology to reveal cryptic population histories: review and synthesis of 29 ancient DNA studies.

Ramakrishnan U, Hadly EA.

Mol Ecol. 2009 Apr;18(7):1310-30. doi: 10.1111/j.1365-294X.2009.04092.x. Review.

PMID:
19281471
[PubMed - indexed for MEDLINE]
3.

Back to BaySICS: a user-friendly program for Bayesian Statistical Inference from Coalescent Simulations.

Sandoval-Castellanos E, Palkopoulou E, Dalén L.

PLoS One. 2014 May 27;9(5):e98011. doi: 10.1371/journal.pone.0098011. eCollection 2014.

PMID:
24865457
[PubMed - in process]
Free PMC Article
4.
5.

Influence of climate warming on arctic mammals? New insights from ancient DNA studies of the collared lemming Dicrostonyx torquatus.

Prost S, Smirnov N, Fedorov VB, Sommer RS, Stiller M, Nagel D, Knapp M, Hofreiter M.

PLoS One. 2010 May 27;5(5):e10447. doi: 10.1371/journal.pone.0010447. Erratum in: PLoS One. 2010;5(7) doi: 10.1371/annotation/25713b22-1ec4-4a23-86e2-f18873089157.

PMID:
20523724
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Bayesian analysis of genetic differentiation between populations.

Corander J, Waldmann P, Sillanpää MJ.

Genetics. 2003 Jan;163(1):367-74.

PMID:
12586722
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Elevated substitution rate estimates from ancient DNA: model violation and bias of Bayesian methods.

Navascués M, Emerson BC.

Mol Ecol. 2009 Nov;18(21):4390-7. doi: 10.1111/j.1365-294X.2009.04333.x. Epub 2009 Sep 7.

PMID:
19735451
[PubMed - indexed for MEDLINE]
8.

Distinguishing migration from isolation: a Markov chain Monte Carlo approach.

Nielsen R, Wakeley J.

Genetics. 2001 Jun;158(2):885-96.

PMID:
11404349
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Inference on population history and model checking using DNA sequence and microsatellite data with the software DIYABC (v1.0).

Cornuet JM, Ravigné V, Estoup A.

BMC Bioinformatics. 2010 Jul 28;11:401. doi: 10.1186/1471-2105-11-401.

PMID:
20667077
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Inference of demographic history from genealogical trees using reversible jump Markov chain Monte Carlo.

Opgen-Rhein R, Fahrmeir L, Strimmer K.

BMC Evol Biol. 2005 Jan 21;5:6.

PMID:
15663782
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics.

Minin VN, Bloomquist EW, Suchard MA.

Mol Biol Evol. 2008 Jul;25(7):1459-71. doi: 10.1093/molbev/msn090. Epub 2008 Apr 11.

PMID:
18408232
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Dual multiple change-point model leads to more accurate recombination detection.

Minin VN, Dorman KS, Fang F, Suchard MA.

Bioinformatics. 2005 Jul 1;21(13):3034-42. Epub 2005 May 24.

PMID:
15914546
[PubMed - indexed for MEDLINE]
Free Article
13.

Recent volcanism and mitochondrial DNA structuring in the lizard Gallotia atlantica from the island of Lanzarote.

Bloor P, Kemp SJ, Brown RP.

Mol Ecol. 2008 Feb;17(3):854-66. doi: 10.1111/j.1365-294X.2007.03575.x. Epub 2007 Dec 20.

PMID:
18179441
[PubMed - indexed for MEDLINE]
14.

BAPS 2: enhanced possibilities for the analysis of genetic population structure.

Corander J, Waldmann P, Marttinen P, Sillanpää MJ.

Bioinformatics. 2004 Oct 12;20(15):2363-9. Epub 2004 Apr 8.

PMID:
15073024
[PubMed - indexed for MEDLINE]
Free Article
15.

Nuclear DNA microsatellites reveal genetic variation but a lack of phylogeographical structure in an endangered species, Fraxinus mandshurica, across North-east China.

Hu LJ, Uchiyama K, Shen HL, Saito Y, Tsuda Y, Ide Y.

Ann Bot. 2008 Aug;102(2):195-205. doi: 10.1093/aob/mcn074. Epub 2008 May 12.

PMID:
18477559
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

BGX: a Bioconductor package for the Bayesian integrated analysis of Affymetrix GeneChips.

Turro E, Bochkina N, Hein AM, Richardson S.

BMC Bioinformatics. 2007 Nov 12;8:439.

PMID:
17997843
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Bayesian coestimation of phylogeny and sequence alignment.

Lunter G, Miklós I, Drummond A, Jensen JL, Hein J.

BMC Bioinformatics. 2005 Apr 1;6:83.

PMID:
15804354
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

GENOMEPOP: a program to simulate genomes in populations.

Carvajal-Rodríguez A.

BMC Bioinformatics. 2008 Apr 30;9:223. doi: 10.1186/1471-2105-9-223.

PMID:
18447924
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Joint analysis of demography and selection in population genetics: where do we stand and where could we go?

Li J, Li H, Jakobsson M, Li S, Sjödin P, Lascoux M.

Mol Ecol. 2012 Jan;21(1):28-44. doi: 10.1111/j.1365-294X.2011.05308.x. Epub 2011 Oct 14. Review.

PMID:
21999307
[PubMed - indexed for MEDLINE]
20.

A hierarchical semiparametric regression model for combining HIV-1 phylogenetic analyses using iterative reweighting algorithms.

Liang LJ, Weiss RE.

Biometrics. 2007 Sep;63(3):733-41.

PMID:
17825006
[PubMed - indexed for MEDLINE]
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