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Results: 1 to 20 of 168

Similar articles for PubMed (Select 21559008)

1.

iCLIP--transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution.

Konig J, Zarnack K, Rot G, Curk T, Kayikci M, Zupan B, Turner DJ, Luscombe NM, Ule J.

J Vis Exp. 2011 Apr 30;(50). pii: 2638. doi: 10.3791/2638.

2.

Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome.

Linder B, Grozhik AV, Olarerin-George AO, Meydan C, Mason CE, Jaffrey SR.

Nat Methods. 2015 Jun 29. doi: 10.1038/nmeth.3453. [Epub ahead of print]

PMID:
26121403
3.

[Methods to study the RNA-protein interactions].

Popova VV, Kurshakova MM, Kopytova DV.

Mol Biol (Mosk). 2015 May-Jun;49(3):472-81. doi: 10.7868/S0026898415020111. Russian.

PMID:
26107901
5.

Genome-wide profiling of in vivo RNA structure at single-nucleotide resolution using structure-seq.

Ding Y, Kwok CK, Tang Y, Bevilacqua PC, Assmann SM.

Nat Protoc. 2015 Jul;10(7):1050-66. doi: 10.1038/nprot.2015.064. Epub 2015 Jun 18.

PMID:
26086407
6.

RNA Bind-n-Seq: Measuring the Binding Affinity Landscape of RNA-Binding Proteins.

Lambert NJ, Robertson AD, Burge CB.

Methods Enzymol. 2015;558:465-93. doi: 10.1016/bs.mie.2015.02.007. Epub 2015 May 12.

PMID:
26068750
7.

Deciphering the protein-RNA recognition code: Combining large-scale quantitative methods with structural biology.

Hennig J, Sattler M.

Bioessays. 2015 Jun 8. doi: 10.1002/bies.201500033. [Epub ahead of print]

PMID:
26059946
8.

Drosophila Imp iCLIP identifies an RNA assemblage coordinating F-actin formation.

Hansen HT, Rasmussen SH, Adolph SK, Plass M, Krogh A, Sanford J, Nielsen FC, Christiansen J.

Genome Biol. 2015 Jun 9;16(1):123. doi: 10.1186/s13059-015-0687-0.

9.

Protein-DNA binding in high-resolution.

Mahony S, Pugh BF.

Crit Rev Biochem Mol Biol. 2015 Jun 3:1-15. [Epub ahead of print]

PMID:
26038153
10.

High-Throughput Single-Cell Labeling (Hi-SCL) for RNA-Seq Using Drop-Based Microfluidics.

Rotem A, Ram O, Shoresh N, Sperling RA, Schnall-Levin M, Zhang H, Basu A, Bernstein BE, Weitz DA.

PLoS One. 2015 May 22;10(5):e0116328. doi: 10.1371/journal.pone.0116328. eCollection 2015.

11.

Position-specific binding of FUS to nascent RNA regulates mRNA length.

Masuda A, Takeda J, Okuno T, Okamoto T, Ohkawara B, Ito M, Ishigaki S, Sobue G, Ohno K.

Genes Dev. 2015 May 15;29(10):1045-57. doi: 10.1101/gad.255737.114.

PMID:
25995189
12.

Design and bioinformatics analysis of genome-wide CLIP experiments.

Wang T, Xiao G, Chu Y, Zhang MQ, Corey DR, Xie Y.

Nucleic Acids Res. 2015 Jun 23;43(11):5263-74. doi: 10.1093/nar/gkv439. Epub 2015 May 9.

13.

Mapping protein-RNA interactions by RCAP, RNA-cross-linking and peptide fingerprinting.

Vaughan RC, Kao CC.

Methods Mol Biol. 2015;1297:225-36. doi: 10.1007/978-1-4939-2562-9_16.

PMID:
25896007
14.

Mapping RNA interactions to proteins in virions using CLIP-Seq.

Fan B, Ni P, Kao CC.

Methods Mol Biol. 2015;1297:213-24. doi: 10.1007/978-1-4939-2562-9_15.

PMID:
25896006
15.

Spatial reconstruction of single-cell gene expression data.

Satija R, Farrell JA, Gennert D, Schier AF, Regev A.

Nat Biotechnol. 2015 May;33(5):495-502. doi: 10.1038/nbt.3192. Epub 2015 Apr 13.

PMID:
25867923
16.

Transcriptome-wide identification of in vivo interactions between RNAs and RNA-binding proteins by RIP and PAR-CLIP assays.

González-Buendía E, Saldaña-Meyer R, Meier K, Recillas-Targa F.

Methods Mol Biol. 2015;1288:413-28. doi: 10.1007/978-1-4939-2474-5_24.

PMID:
25827894
17.

RNA-binding protein hnRNPLL regulates mRNA splicing and stability during B-cell to plasma-cell differentiation.

Chang X, Li B, Rao A.

Proc Natl Acad Sci U S A. 2015 Apr 14;112(15):E1888-97. doi: 10.1073/pnas.1422490112. Epub 2015 Mar 30.

PMID:
25825742
18.

Intramolecular circularization increases efficiency of RNA sequencing and enables CLIP-Seq of nuclear RNA from human cells.

Chu Y, Wang T, Dodd D, Xie Y, Janowski BA, Corey DR.

Nucleic Acids Res. 2015 Jun 23;43(11):e75. doi: 10.1093/nar/gkv213. Epub 2015 Mar 26.

19.

CLIP-seq to discover transcriptome-wide imprinting of RNA binding proteins in living cells.

Saulière J, Le Hir H.

Methods Mol Biol. 2015;1296:151-60. doi: 10.1007/978-1-4939-2547-6_14.

PMID:
25791598
20.

RNA-binding proteins in neurodegeneration: Seq and you shall receive.

Nussbacher JK, Batra R, Lagier-Tourenne C, Yeo GW.

Trends Neurosci. 2015 Apr;38(4):226-36. doi: 10.1016/j.tins.2015.02.003. Epub 2015 Mar 9. Review.

PMID:
25765321
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