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Results: 1 to 20 of 124

1.

mirConnX: condition-specific mRNA-microRNA network integrator.

Huang GT, Athanassiou C, Benos PV.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W416-23. doi: 10.1093/nar/gkr276. Epub 2011 May 10.

PMID:
21558324
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

ComiR: Combinatorial microRNA target prediction tool.

Coronnello C, Benos PV.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W159-64. doi: 10.1093/nar/gkt379. Epub 2013 May 22.

PMID:
23703208
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

MAGIA, a web-based tool for miRNA and Genes Integrated Analysis.

Sales G, Coppe A, Bisognin A, Biasiolo M, Bortoluzzi S, Romualdi C.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W352-9. doi: 10.1093/nar/gkq423. Epub 2010 May 19.

PMID:
20484379
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

CircuitsDB: a database of mixed microRNA/transcription factor feed-forward regulatory circuits in human and mouse.

Friard O, Re A, Taverna D, De Bortoli M, Corá D.

BMC Bioinformatics. 2010 Aug 23;11:435. doi: 10.1186/1471-2105-11-435.

PMID:
20731828
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Participation of microRNAs in human interactome: extraction of microRNA-microRNA regulations.

Sengupta D, Bandyopadhyay S.

Mol Biosyst. 2011 Jun;7(6):1966-73. doi: 10.1039/c0mb00347f. Epub 2011 Apr 11.

PMID:
21483898
[PubMed - indexed for MEDLINE]
6.

STARNET 2: a web-based tool for accelerating discovery of gene regulatory networks using microarray co-expression data.

Jupiter D, Chen H, VanBuren V.

BMC Bioinformatics. 2009 Oct 14;10:332. doi: 10.1186/1471-2105-10-332.

PMID:
19828039
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

MAGIA²: from miRNA and genes expression data integrative analysis to microRNA-transcription factor mixed regulatory circuits (2012 update).

Bisognin A, Sales G, Coppe A, Bortoluzzi S, Romualdi C.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W13-21. doi: 10.1093/nar/gks460. Epub 2012 May 21.

PMID:
22618880
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Inferring microRNA and transcription factor regulatory networks in heterogeneous data.

Le TD, Liu L, Liu B, Tsykin A, Goodall GJ, Satou K, Li J.

BMC Bioinformatics. 2013 Mar 11;14:92. doi: 10.1186/1471-2105-14-92.

PMID:
23497388
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

PMRD: plant microRNA database.

Zhang Z, Yu J, Li D, Zhang Z, Liu F, Zhou X, Wang T, Ling Y, Su Z.

Nucleic Acids Res. 2010 Jan;38(Database issue):D806-13. doi: 10.1093/nar/gkp818. Epub 2009 Oct 6.

PMID:
19808935
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function.

Warde-Farley D, Donaldson SL, Comes O, Zuberi K, Badrawi R, Chao P, Franz M, Grouios C, Kazi F, Lopes CT, Maitland A, Mostafavi S, Montojo J, Shao Q, Wright G, Bader GD, Morris Q.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W214-20. doi: 10.1093/nar/gkq537.

PMID:
20576703
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Joint Bayesian inference of condition-specific miRNA and transcription factor activities from combined gene and microRNA expression data.

Zacher B, Abnaof K, Gade S, Younesi E, Tresch A, Fröhlich H.

Bioinformatics. 2012 Jul 1;28(13):1714-20. doi: 10.1093/bioinformatics/bts257. Epub 2012 May 4.

PMID:
22563068
[PubMed - indexed for MEDLINE]
Free Article
12.

The microRNA body map: dissecting microRNA function through integrative genomics.

Mestdagh P, Lefever S, Pattyn F, Ridzon D, Fredlund E, Fieuw A, Ongenaert M, Vermeulen J, De Paepe A, Wong L, Speleman F, Chen C, Vandesompele J.

Nucleic Acids Res. 2011 Nov 1;39(20):e136. doi: 10.1093/nar/gkr646. Epub 2011 Aug 10.

PMID:
21835775
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

miRFANs: an integrated database for Arabidopsis thaliana microRNA function annotations.

Liu H, Jin T, Liao R, Wan L, Xu B, Zhou S, Guan J.

BMC Plant Biol. 2012 May 14;12:68. doi: 10.1186/1471-2229-12-68.

PMID:
22583976
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expression.

Nam S, Li M, Choi K, Balch C, Kim S, Nephew KP.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W356-62. doi: 10.1093/nar/gkp294. Epub 2009 May 6.

PMID:
19420067
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

TransmiR: a transcription factor-microRNA regulation database.

Wang J, Lu M, Qiu C, Cui Q.

Nucleic Acids Res. 2010 Jan;38(Database issue):D119-22. doi: 10.1093/nar/gkp803. Epub 2009 Sep 28.

PMID:
19786497
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

TranscriptomeBrowser 3.0: introducing a new compendium of molecular interactions and a new visualization tool for the study of gene regulatory networks.

Lepoivre C, Bergon A, Lopez F, Perumal NB, Nguyen C, Imbert J, Puthier D.

BMC Bioinformatics. 2012 Jan 31;13:19. doi: 10.1186/1471-2105-13-19.

PMID:
22292669
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

CRSD: a comprehensive web server for composite regulatory signature discovery.

Liu CC, Lin CC, Chen WS, Chen HY, Chang PC, Chen JJ, Yang PC.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W571-7.

PMID:
16845073
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

miRGator: an integrated system for functional annotation of microRNAs.

Nam S, Kim B, Shin S, Lee S.

Nucleic Acids Res. 2008 Jan;36(Database issue):D159-64. Epub 2007 Oct 16.

PMID:
17942429
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

An integrated approach to characterize transcription factor and microRNA regulatory networks involved in Schwann cell response to peripheral nerve injury.

Chang LW, Viader A, Varghese N, Payton JE, Milbrandt J, Nagarajan R.

BMC Genomics. 2013 Feb 6;14:84. doi: 10.1186/1471-2164-14-84.

PMID:
23387820
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows.

Paraskevopoulou MD, Georgakilas G, Kostoulas N, Vlachos IS, Vergoulis T, Reczko M, Filippidis C, Dalamagas T, Hatzigeorgiou AG.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W169-73. doi: 10.1093/nar/gkt393. Epub 2013 May 16.

PMID:
23680784
[PubMed - indexed for MEDLINE]
Free PMC Article

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