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Results: 1 to 20 of 66

1.

Towards standardization of the description and publication of next-generation sequencing datasets of fungal communities.

Henrik Nilsson R, Tedersoo L, Lindahl BD, Kjøller R, Carlsen T, Quince C, Abarenkov K, Pennanen T, Stenlid J, Bruns T, Larsson KH, Kõljalg U, Kauserud H.

New Phytol. 2011 Jul;191(2):314-8. doi: 10.1111/j.1469-8137.2011.03755.x. Epub 2011 May 9. No abstract available.

PMID:
21557749
[PubMed - indexed for MEDLINE]
2.

Next-generation sequencing and potential applications in fungal genomics.

Sanmiguel P.

Methods Mol Biol. 2011;722:51-60. doi: 10.1007/978-1-61779-040-9_4.

PMID:
21590412
[PubMed - indexed for MEDLINE]
3.

From genomics to metagenomics.

Desai N, Antonopoulos D, Gilbert JA, Glass EM, Meyer F.

Curr Opin Biotechnol. 2012 Feb;23(1):72-6. doi: 10.1016/j.copbio.2011.12.017. Epub 2012 Jan 5. Review.

PMID:
22227326
[PubMed - indexed for MEDLINE]
4.

ACMG clinical laboratory standards for next-generation sequencing.

Rehm HL, Bale SJ, Bayrak-Toydemir P, Berg JS, Brown KK, Deignan JL, Friez MJ, Funke BH, Hegde MR, Lyon E; Working Group of the American College of Medical Genetics and Genomics Laboratory Quality Assurance Commitee.

Genet Med. 2013 Sep;15(9):733-47. doi: 10.1038/gim.2013.92. Epub 2013 Jul 25.

PMID:
23887774
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Massively parallel sequencing technology in pathogenic microbes.

Tripathy S, Jiang RH.

Methods Mol Biol. 2012;835:271-94. doi: 10.1007/978-1-61779-501-5_17.

PMID:
22183660
[PubMed - indexed for MEDLINE]
6.

A bioinformatics pipeline for sequence-based analyses of fungal biodiversity.

Taylor DL, Houston S.

Methods Mol Biol. 2011;722:141-55. doi: 10.1007/978-1-61779-040-9_10.

PMID:
21590418
[PubMed - indexed for MEDLINE]
7.

The ITS region as a target for characterization of fungal communities using emerging sequencing technologies.

Nilsson RH, Ryberg M, Abarenkov K, Sjökvist E, Kristiansson E.

FEMS Microbiol Lett. 2009 Jul;296(1):97-101. doi: 10.1111/j.1574-6968.2009.01618.x. Epub 2009 May 1.

PMID:
19459974
[PubMed - indexed for MEDLINE]
8.

Fungal high-throughput taxonomic identification tool for use with next-generation sequencing (FHiTINGS).

Dannemiller KC, Reeves D, Bibby K, Yamamoto N, Peccia J.

J Basic Microbiol. 2014 Apr;54(4):315-21. doi: 10.1002/jobm.201200507. Epub 2013 Jun 14.

PMID:
23765392
[PubMed - indexed for MEDLINE]
9.

Genomics of the fungal kingdom: insights into eukaryotic biology.

Galagan JE, Henn MR, Ma LJ, Cuomo CA, Birren B.

Genome Res. 2005 Dec;15(12):1620-31. Review. Erratum in: Genome Res. 2006 Feb;16(2):304.

PMID:
16339359
[PubMed - indexed for MEDLINE]
Free Article
10.

Species abundance distributions and richness estimations in fungal metagenomics--lessons learned from community ecology.

Unterseher M, Jumpponen A, Opik M, Tedersoo L, Moora M, Dormann CF, Schnittler M.

Mol Ecol. 2011 Jan;20(2):275-85. doi: 10.1111/j.1365-294X.2010.04948.x. Epub 2010 Dec 13.

PMID:
21155911
[PubMed - indexed for MEDLINE]
11.

[Is NGS already in clinical use?].

Jordan B.

Med Sci (Paris). 2011 Dec;27(12):1127-30. doi: 10.1051/medsci/20112712020. Epub 2011 Dec 23. French. No abstract available.

PMID:
22192753
[PubMed - indexed for MEDLINE]
Free Article
12.

Next generation sequencing: the technology we need in pediatric laboratories?

Couderc R, Jonard L, Louha M.

Clin Biochem. 2011 May;44(7):514-5. doi: 10.1016/j.clinbiochem.2011.02.030. No abstract available.

PMID:
22036354
[PubMed - indexed for MEDLINE]
13.

Effects of cloning and root-tip size on observations of fungal ITS sequences from Picea glauca roots.

Lindner DL, Banik MT.

Mycologia. 2009 Jan-Feb;101(1):157-65.

PMID:
19271678
[PubMed - indexed for MEDLINE]
Free Article
14.

Influence of DNA extraction and PCR amplification on studies of soil fungal communities based on amplicon sequencing.

Xu L, Ravnskov S, Larsen J, Nicolaisen M.

Can J Microbiol. 2011 Dec;57(12):1062-6. doi: 10.1139/w11-100. Epub 2011 Dec 1.

PMID:
22133149
[PubMed - indexed for MEDLINE]
15.

Genomics. Genome project standards in a new era of sequencing.

Chain PS, Grafham DV, Fulton RS, Fitzgerald MG, Hostetler J, Muzny D, Ali J, Birren B, Bruce DC, Buhay C, Cole JR, Ding Y, Dugan S, Field D, Garrity GM, Gibbs R, Graves T, Han CS, Harrison SH, Highlander S, Hugenholtz P, Khouri HM, Kodira CD, Kolker E, Kyrpides NC, Lang D, Lapidus A, Malfatti SA, Markowitz V, Metha T, Nelson KE, Parkhill J, Pitluck S, Qin X, Read TD, Schmutz J, Sozhamannan S, Sterk P, Strausberg RL, Sutton G, Thomson NR, Tiedje JM, Weinstock G, Wollam A; Genomic Standards Consortium Human Microbiome Project Jumpstart Consortium, Detter JC.

Science. 2009 Oct 9;326(5950):236-7. doi: 10.1126/science.1180614. No abstract available.

PMID:
19815760
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperate Quercus macrocarpa phyllosphere.

Jumpponen A, Jones KL.

New Phytol. 2009 Oct;184(2):438-48. doi: 10.1111/j.1469-8137.2009.02990.x. Epub 2009 Aug 11.

PMID:
19674337
[PubMed - indexed for MEDLINE]
17.

[Next generation sequencing technologies (NGST) -- development and applications].

Mihály Z, Gyorffy B.

Orv Hetil. 2011 Jan 9;152(2):55-62. doi: 10.1556/OH.2011.29007. Review. Hungarian.

PMID:
21177232
[PubMed - indexed for MEDLINE]
Free Article
18.

New DNA sequencing technologies open a promising era for cancer research and treatment.

Sastre L.

Clin Transl Oncol. 2011 May;13(5):301-6. doi: 10.1007/s12094-011-0658-1. Review.

PMID:
21596657
[PubMed - indexed for MEDLINE]
19.

Fungal genomics and pathogenicity.

Yoder OC, Turgeon BG.

Curr Opin Plant Biol. 2001 Aug;4(4):315-21. Review.

PMID:
11418341
[PubMed - indexed for MEDLINE]
20.

Assessment of soil fungal communities using pyrosequencing.

Lim YW, Kim BK, Kim C, Jung HS, Kim BS, Lee JH, Chun J.

J Microbiol. 2010 Jun;48(3):284-9. doi: 10.1007/s12275-010-9369-5. Epub 2010 Jun 23.

PMID:
20571944
[PubMed - indexed for MEDLINE]
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