Format
Sort by

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 99

1.

The energy computation paradox and ab initio protein folding.

Faver JC, Benson ML, He X, Roberts BP, Wang B, Marshall MS, Sherrill CD, Merz KM Jr.

PLoS One. 2011 Apr 25;6(4):e18868. doi: 10.1371/journal.pone.0018868.

2.

How well can we predict native contacts in proteins based on decoy structures and their energies?

Zhu J, Zhu Q, Shi Y, Liu H.

Proteins. 2003 Sep 1;52(4):598-608.

PMID:
12910459
3.

Smoothing protein energy landscapes by integrating folding models with structure prediction.

Pritchard-Bell A, Shell MS.

Biophys J. 2011 Nov 2;101(9):2251-9. doi: 10.1016/j.bpj.2011.09.036. Epub 2011 Nov 1.

5.

[Protein folding: in vitro studies].

Yon-Kahn J.

Med Sci (Paris). 2005 Jun-Jul;21(6-7):601-7. Review. French.

6.

Protein folding: from the levinthal paradox to structure prediction.

Honig B.

J Mol Biol. 1999 Oct 22;293(2):283-93. Review.

PMID:
10550209
8.

The consequences of scoring docked ligand conformations using free energy correlations.

Spyrakis F, Amadasi A, Fornabaio M, Abraham DJ, Mozzarelli A, Kellogg GE, Cozzini P.

Eur J Med Chem. 2007 Jul;42(7):921-33. Epub 2007 Jan 21.

PMID:
17346861
9.

Integrated prediction of protein folding and unfolding rates from only size and structural class.

De Sancho D, Muñoz V.

Phys Chem Chem Phys. 2011 Oct 14;13(38):17030-43. doi: 10.1039/c1cp20402e. Epub 2011 Jun 14.

PMID:
21670826
10.

Exploring the energy landscapes of protein folding simulations with Bayesian computation.

Burkoff NS, Várnai C, Wells SA, Wild DL.

Biophys J. 2012 Feb 22;102(4):878-86. doi: 10.1016/j.bpj.2011.12.053. Epub 2012 Feb 21.

11.

Development of an ab initio protein structure prediction system ABLE.

Ishida T, Nishimura T, Nozaki M, Inoue T, Terada T, Nakamura S, Shimizu K.

Genome Inform. 2003;14:228-37.

PMID:
15706537
12.
13.

Another look at the conditions for the extraction of protein knowledge-based potentials.

Betancourt MR.

Proteins. 2009 Jul;76(1):72-85. doi: 10.1002/prot.22320.

PMID:
19089977
14.

Accuracy of side-chain prediction upon near-native protein backbones generated by Ab initio folding methods.

Huang ES, Koehl P, Levitt M, Pappu RV, Ponder JW.

Proteins. 1998 Nov 1;33(2):204-17.

PMID:
9779788
15.
17.

Downhill protein folding: evolution meets physics.

Gruebele M.

C R Biol. 2005 Aug;328(8):701-12. Epub 2005 Apr 1. Review.

PMID:
16125648
18.

Shaping up the protein folding funnel by local interaction: lesson from a structure prediction study.

Chikenji G, Fujitsuka Y, Takada S.

Proc Natl Acad Sci U S A. 2006 Feb 28;103(9):3141-6. Epub 2006 Feb 17.

19.

Identifying native-like protein structures using physics-based potentials.

Dominy BN, Brooks CL.

J Comput Chem. 2002 Jan 15;23(1):147-60.

PMID:
11913380
20.

Fast accurate evaluation of protein solvent exposure.

Zhang N, Zeng C, Wingreen NS.

Proteins. 2004 Nov 15;57(3):565-76.

PMID:
15382246
Items per page

Supplemental Content

Write to the Help Desk