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Results: 1 to 20 of 61

1.

Proteopedia: a status report on the collaborative, 3D web-encyclopedia of proteins and other biomolecules.

Prilusky J, Hodis E, Canner D, Decatur WA, Oberholser K, Martz E, Berchanski A, Harel M, Sussman JL.

J Struct Biol. 2011 Aug;175(2):244-52. doi: 10.1016/j.jsb.2011.04.011. Epub 2011 Apr 23.

PMID:
21536137
[PubMed - indexed for MEDLINE]
2.

Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules.

Hodis E, Prilusky J, Martz E, Silman I, Moult J, Sussman JL.

Genome Biol. 2008;9(8):R121. doi: 10.1186/gb-2008-9-8-r121. Epub 2008 Aug 3.

PMID:
18673581
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D.

Porollo A, Meller J.

BMC Bioinformatics. 2007 Aug 29;8:316.

PMID:
17727718
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

MutDB services: interactive structural analysis of mutation data.

Dantzer J, Moad C, Heiland R, Mooney S.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W311-4.

PMID:
15980479
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

PDTD: a web-accessible protein database for drug target identification.

Gao Z, Li H, Zhang H, Liu X, Kang L, Luo X, Zhu W, Chen K, Wang X, Jiang H.

BMC Bioinformatics. 2008 Feb 19;9:104. doi: 10.1186/1471-2105-9-104.

PMID:
18282303
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The Structural Biology Knowledgebase: a portal to protein structures, sequences, functions, and methods.

Gabanyi MJ, Adams PD, Arnold K, Bordoli L, Carter LG, Flippen-Andersen J, Gifford L, Haas J, Kouranov A, McLaughlin WA, Micallef DI, Minor W, Shah R, Schwede T, Tao YP, Westbrook JD, Zimmerman M, Berman HM.

J Struct Funct Genomics. 2011 Jul;12(2):45-54. doi: 10.1007/s10969-011-9106-2. Epub 2011 Apr 7.

PMID:
21472436
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The Protein Structure Initiative Structural Biology Knowledgebase Technology Portal: a structural biology web resource.

Gifford LK, Carter LG, Gabanyi MJ, Berman HM, Adams PD.

J Struct Funct Genomics. 2012 Jun;13(2):57-62. doi: 10.1007/s10969-012-9133-7. Epub 2012 Apr 6.

PMID:
22527514
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The SEEK: a platform for sharing data and models in systems biology.

Wolstencroft K, Owen S, du Preez F, Krebs O, Mueller W, Goble C, Snoep JL.

Methods Enzymol. 2011;500:629-55. doi: 10.1016/B978-0-12-385118-5.00029-3.

PMID:
21943917
[PubMed - indexed for MEDLINE]
9.

MOLVIE: an interactive visualization environment for molecular structures.

Sun H, Li M, Xu Y.

Comput Methods Programs Biomed. 2003 May;71(1):85-90.

PMID:
12725967
[PubMed - indexed for MEDLINE]
10.

maxdLoad2 and maxdBrowse: standards-compliant tools for microarray experimental annotation, data management and dissemination.

Hancock D, Wilson M, Velarde G, Morrison N, Hayes A, Hulme H, Wood AJ, Nashar K, Kell DB, Brass A.

BMC Bioinformatics. 2005 Nov 3;6:264.

PMID:
16269077
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

ProSAT2--Protein Structure Annotation Server.

Gabdoulline RR, Ulbrich S, Richter S, Wade RC.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W79-83.

PMID:
16845114
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Tools for integrated sequence-structure analysis with UCSF Chimera.

Meng EC, Pettersen EF, Couch GS, Huang CC, Ferrin TE.

BMC Bioinformatics. 2006 Jul 12;7:339.

PMID:
16836757
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Proteopedia.Org: a scientific "Wiki" bridging the rift between 3D structure and function of biomacromolecules.

Martz E.

Biopolymers. 2009;92(1):76-7. doi: 10.1002/bip.21126. No abstract available.

PMID:
19117028
[PubMed - indexed for MEDLINE]
14.

Columba: an integrated database of proteins, structures, and annotations.

Trissl S, Rother K, Müller H, Steinke T, Koch I, Preissner R, Frömmel C, Leser U.

BMC Bioinformatics. 2005 Mar 31;6:81.

PMID:
15801979
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

JavaProtein Dossier: a novel web-based data visualization tool for comprehensive analysis of protein structure.

Neshich G, Rocchia W, Mancini AL, Yamagishi ME, Kuser PR, Fileto R, Baudet C, Pinto IP, Montagner AJ, Palandrani JF, Krauchenco JN, Torres RC, Souza S, Togawa RC, Higa RH.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W595-601.

PMID:
15215458
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

FPV: fast protein visualization using Java 3D.

Can T, Wang Y, Wang YF, Su J.

Bioinformatics. 2003 May 22;19(8):913-22.

PMID:
12761052
[PubMed - indexed for MEDLINE]
Free Article
17.

pKNOT: the protein KNOT web server.

Lai YL, Yen SC, Yu SH, Hwang JK.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W420-4. Epub 2007 May 25.

PMID:
17526524
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

TOPSAN: a dynamic web database for structural genomics.

Ellrott K, Zmasek CM, Weekes D, Sri Krishna S, Bakolitsa C, Godzik A, Wooley J.

Nucleic Acids Res. 2011 Jan;39(Database issue):D494-6. doi: 10.1093/nar/gkq902. Epub 2010 Oct 20.

PMID:
20961957
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Protein structure databases.

Laskowski RA.

Methods Mol Biol. 2010;609:59-82. doi: 10.1007/978-1-60327-241-4_4.

PMID:
20221913
[PubMed - indexed for MEDLINE]
20.

Developing protein documentaries and other multimedia presentations for molecular biology.

Quinn G, Wang HP, Martinez D, Bourne PE.

Pac Symp Biocomput. 1999:380-91.

PMID:
10380212
[PubMed - indexed for MEDLINE]

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