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Results: 1 to 20 of 168

1.

Next-generation sequencing of transcriptomes: a guide to RNA isolation in nonmodel animals.

Gayral P, Weinert L, Chiari Y, Tsagkogeorga G, Ballenghien M, Galtier N.

Mol Ecol Resour. 2011 Jul;11(4):650-61. doi: 10.1111/j.1755-0998.2011.03010.x. Epub 2011 Apr 12.

PMID:
21481219
[PubMed - indexed for MEDLINE]
2.

De novo transcriptome characterization and development of genomic tools for Scabiosa columbaria L. using next-generation sequencing techniques.

Angeloni F, Wagemaker CA, Jetten MS, Op den Camp HJ, Janssen-Megens EM, Francoijs KJ, Stunnenberg HG, Ouborg NJ.

Mol Ecol Resour. 2011 Jul;11(4):662-74. doi: 10.1111/j.1755-0998.2011.02990.x. Epub 2011 Feb 21.

PMID:
21676196
[PubMed - indexed for MEDLINE]
3.

A strand-specific library preparation protocol for RNA sequencing.

Borodina T, Adjaye J, Sultan M.

Methods Enzymol. 2011;500:79-98. doi: 10.1016/B978-0-12-385118-5.00005-0.

PMID:
21943893
[PubMed - indexed for MEDLINE]
4.

Next-generation sequencing and its applications in molecular diagnostics.

Su Z, Ning B, Fang H, Hong H, Perkins R, Tong W, Shi L.

Expert Rev Mol Diagn. 2011 Apr;11(3):333-43. doi: 10.1586/erm.11.3. Review.

PMID:
21463242
[PubMed - indexed for MEDLINE]
5.

Retinal transcriptome profiling by directional next-generation sequencing using 100 ng of total RNA.

Brooks MJ, Rajasimha HK, Swaroop A.

Methods Mol Biol. 2012;884:319-34. doi: 10.1007/978-1-61779-848-1_23.

PMID:
22688717
[PubMed - indexed for MEDLINE]
6.

Reference-free transcriptome assembly in non-model animals from next-generation sequencing data.

Cahais V, Gayral P, Tsagkogeorga G, Melo-Ferreira J, Ballenghien M, Weinert L, Chiari Y, Belkhir K, Ranwez V, Galtier N.

Mol Ecol Resour. 2012 Sep;12(5):834-45. doi: 10.1111/j.1755-0998.2012.03148.x. Epub 2012 Apr 30.

PMID:
22540679
[PubMed - indexed for MEDLINE]
7.

Advances in whole genome sequencing technology.

Zhao J, Grant SF.

Curr Pharm Biotechnol. 2011 Feb 1;12(2):293-305. Review.

PMID:
21050163
[PubMed - indexed for MEDLINE]
8.

Preparation of normalized cDNA libraries for 454 Titanium transcriptome sequencing.

Lai Z, Zou Y, Kane NC, Choi JH, Wang X, Rieseberg LH.

Methods Mol Biol. 2012;888:119-33. doi: 10.1007/978-1-61779-870-2_8.

PMID:
22665279
[PubMed - indexed for MEDLINE]
9.

Sequencing technologies and genome sequencing.

Pareek CS, Smoczynski R, Tretyn A.

J Appl Genet. 2011 Nov;52(4):413-35. doi: 10.1007/s13353-011-0057-x. Epub 2011 Jun 23. Review.

PMID:
21698376
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Efficient recovery of whole blood RNA--a comparison of commercial RNA extraction protocols for high-throughput applications in wildlife species.

Schwochow D, Serieys LE, Wayne RK, Thalmann O.

BMC Biotechnol. 2012 Jun 27;12:33. doi: 10.1186/1472-6750-12-33.

PMID:
22738215
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Transcriptome sequencing and high-resolution melt analysis advance single nucleotide polymorphism discovery in duplicated salmonids.

Seeb JE, Pascal CE, Grau ED, Seeb LW, Templin WD, Harkins T, Roberts SB.

Mol Ecol Resour. 2011 Mar;11(2):335-48. doi: 10.1111/j.1755-0998.2010.02936.x. Epub 2010 Nov 24.

PMID:
21429141
[PubMed - indexed for MEDLINE]
12.

Benchmarking next-generation transcriptome sequencing for functional and evolutionary genomics.

Gibbons JG, Janson EM, Hittinger CT, Johnston M, Abbot P, Rokas A.

Mol Biol Evol. 2009 Dec;26(12):2731-44. doi: 10.1093/molbev/msp188. Epub 2009 Aug 25.

PMID:
19706727
[PubMed - indexed for MEDLINE]
Free Article
13.

Next-generation sequencing and potential applications in fungal genomics.

Sanmiguel P.

Methods Mol Biol. 2011;722:51-60. doi: 10.1007/978-1-61779-040-9_4.

PMID:
21590412
[PubMed - indexed for MEDLINE]
14.

Transcriptomics using next generation sequencing technologies.

Lee-Liu D, Almonacid LI, Faunes F, Melo F, Larrain J.

Methods Mol Biol. 2012;917:293-317. doi: 10.1007/978-1-61779-992-1_18.

PMID:
22956096
[PubMed - indexed for MEDLINE]
15.

Accurate estimation of expression levels of homologous genes in RNA-seq experiments.

Pa┼čaniuc B, Zaitlen N, Halperin E.

J Comput Biol. 2011 Mar;18(3):459-68. doi: 10.1089/cmb.2010.0259.

PMID:
21385047
[PubMed - indexed for MEDLINE]
16.

RNA-Seq for transcriptome analysis in non-model plants.

Garg R, Jain M.

Methods Mol Biol. 2013;1069:43-58. doi: 10.1007/978-1-62703-613-9_4.

PMID:
23996307
[PubMed - indexed for MEDLINE]
17.

Next-generation sequencing technologies for environmental DNA research.

Shokralla S, Spall JL, Gibson JF, Hajibabaei M.

Mol Ecol. 2012 Apr;21(8):1794-805. doi: 10.1111/j.1365-294X.2012.05538.x. Review.

PMID:
22486820
[PubMed - indexed for MEDLINE]
18.

Methods and software in NGS for TE analysis.

Chaparro C, Sabot F.

Methods Mol Biol. 2012;859:105-14. doi: 10.1007/978-1-61779-603-6_6.

PMID:
22367868
[PubMed - indexed for MEDLINE]
19.

Achieving high throughput sequencing of a cDNA library utilizing an alternative protocol for the bench top next-generation sequencing system.

Wan M, Faruq J, Rosenberg JN, Xia J, Oyler GA, Betenbaugh MJ.

J Microbiol Methods. 2013 Feb 15;92(2):122-6. doi: 10.1016/j.mimet.2012.10.010. Epub 2012 Nov 2.

PMID:
23127394
[PubMed - indexed for MEDLINE]
20.

RNA-Seq technology and its application in fish transcriptomics.

Qian X, Ba Y, Zhuang Q, Zhong G.

OMICS. 2014 Feb;18(2):98-110. doi: 10.1089/omi.2013.0110. Epub 2013 Dec 31. Review.

PMID:
24380445
[PubMed - indexed for MEDLINE]
Free PMC Article

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