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Results: 1 to 20 of 139

1.

Wheat hybridization and polyploidization results in deregulation of small RNAs.

Kenan-Eichler M, Leshkowitz D, Tal L, Noor E, Melamed-Bessudo C, Feldman M, Levy AA.

Genetics. 2011 Jun;188(2):263-72. doi: 10.1534/genetics.111.128348. Epub 2011 Apr 5.

PMID:
21467573
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Widespread, abundant, and diverse TE-associated siRNAs in developing wheat grain.

Sun F, Guo W, Du J, Ni Z, Sun Q, Yao Y.

Gene. 2013 Jun 10;522(1):1-7. doi: 10.1016/j.gene.2013.03.101. Epub 2013 Apr 2.

PMID:
23562726
[PubMed - indexed for MEDLINE]
3.

Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids.

Ha M, Lu J, Tian L, Ramachandran V, Kasschau KD, Chapman EJ, Carrington JC, Chen X, Wang XJ, Chen ZJ.

Proc Natl Acad Sci U S A. 2009 Oct 20;106(42):17835-40. doi: 10.1073/pnas.0907003106. Epub 2009 Oct 5.

PMID:
19805056
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Role of transposon-derived small RNAs in the interplay between genomes and parasitic DNA in rice.

Nosaka M, Itoh J, Nagato Y, Ono A, Ishiwata A, Sato Y.

PLoS Genet. 2012 Sep;8(9):e1002953. doi: 10.1371/journal.pgen.1002953. Epub 2012 Sep 27.

PMID:
23028360
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Dual coding of siRNAs and miRNAs by plant transposable elements.

Piriyapongsa J, Jordan IK.

RNA. 2008 May;14(5):814-21. doi: 10.1261/rna.916708. Epub 2008 Mar 26.

PMID:
18367716
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Big roles for small RNAs in polyploidy, hybrid vigor, and hybrid incompatibility.

Ng DW, Lu J, Chen ZJ.

Curr Opin Plant Biol. 2012 Apr;15(2):154-61. doi: 10.1016/j.pbi.2012.01.007. Epub 2012 Feb 9. Review.

PMID:
22326630
[PubMed - indexed for MEDLINE]
7.

Rapid structural and epigenetic reorganization near transposable elements in hybrid and allopolyploid genomes in Spartina.

Parisod C, Salmon A, Zerjal T, Tenaillon M, Grandbastien MA, Ainouche M.

New Phytol. 2009 Dec;184(4):1003-15. doi: 10.1111/j.1469-8137.2009.03029.x. Epub 2009 Sep 23.

PMID:
19780987
[PubMed - indexed for MEDLINE]
8.

Genome-wide identification of genes regulated in trans by transposable element small interfering RNAs.

McCue AD, Nuthikattu S, Slotkin RK.

RNA Biol. 2013 Aug 1;10(8):1379-95. doi: 10.4161/rna.25555. Epub 2013 Jul 2.

PMID:
23863322
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Characterization of small RNAs and their target genes in wheat seedlings using sequencing-based approaches.

Li YF, Zheng Y, Jagadeeswaran G, Sunkar R.

Plant Sci. 2013 Apr;203-204:17-24. doi: 10.1016/j.plantsci.2012.12.014. Epub 2013 Jan 3.

PMID:
23415324
[PubMed - indexed for MEDLINE]
10.

Massive alterations of the methylation patterns around DNA transposons in the first four generations of a newly formed wheat allohexaploid.

Yaakov B, Kashkush K.

Genome. 2011 Jan;54(1):42-9. doi: 10.1139/G10-091.

PMID:
21217805
[PubMed - indexed for MEDLINE]
11.

Gene expression and stress response mediated by the epigenetic regulation of a transposable element small RNA.

McCue AD, Nuthikattu S, Reeder SH, Slotkin RK.

PLoS Genet. 2012 Feb;8(2):e1002474. doi: 10.1371/journal.pgen.1002474. Epub 2012 Feb 9.

PMID:
22346759
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat.

Shaked H, Kashkush K, Ozkan H, Feldman M, Levy AA.

Plant Cell. 2001 Aug;13(8):1749-59.

PMID:
11487690
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata.

Hollister JD, Smith LM, Guo YL, Ott F, Weigel D, Gaut BS.

Proc Natl Acad Sci U S A. 2011 Feb 8;108(6):2322-7. doi: 10.1073/pnas.1018222108. Epub 2011 Jan 20.

PMID:
21252301
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Domestication of transposable elements into MicroRNA genes in plants.

Li Y, Li C, Xia J, Jin Y.

PLoS One. 2011 May 3;6(5):e19212. doi: 10.1371/journal.pone.0019212.

PMID:
21559273
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Updating of transposable element annotations from large wheat genomic sequences reveals diverse activities and gene associations.

Sabot F, Guyot R, Wicker T, Chantret N, Laubin B, Chalhoub B, Leroy P, Sourdille P, Bernard M.

Mol Genet Genomics. 2005 Sep;274(2):119-30. Epub 2005 Oct 11.

PMID:
16034625
[PubMed - indexed for MEDLINE]
16.

Expression of the rice microRNA miR820 is associated with epigenetic modifications at its own locus.

Nosaka M, Ono A, Ishiwata A, Shimizu-Sato S, Ishimoto K, Noda Y, Sato Y.

Genes Genet Syst. 2013;88(2):105-12.

PMID:
23832302
[PubMed - indexed for MEDLINE]
Free Article
17.

Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: new functional implications for MITEs.

Kuang H, Padmanabhan C, Li F, Kamei A, Bhaskar PB, Ouyang S, Jiang J, Buell CR, Baker B.

Genome Res. 2009 Jan;19(1):42-56. doi: 10.1101/gr.078196.108. Epub 2008 Nov 26.

PMID:
19037014
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing.

Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ.

Plant Physiol. 2009 Dec;151(4):2120-32. doi: 10.1104/pp.109.147280. Epub 2009 Oct 23.

PMID:
19854858
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development.

Cho SH, Addo-Quaye C, Coruh C, Arif MA, Ma Z, Frank W, Axtell MJ.

PLoS Genet. 2008 Dec;4(12):e1000314. doi: 10.1371/journal.pgen.1000314. Epub 2008 Dec 19.

PMID:
19096705
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Small RNAs and transposon silencing in plants.

Ito H.

Dev Growth Differ. 2012 Jan;54(1):100-7. doi: 10.1111/j.1440-169X.2011.01309.x. Epub 2011 Dec 12. Review.

PMID:
22150226
[PubMed - indexed for MEDLINE]
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