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Results: 1 to 20 of 133

Related Citations for PubMed (Select 21429165)

1.

SNP discovery in black cottonwood (Populus trichocarpa) by population transcriptome resequencing.

Geraldes A, Pang J, Thiessen N, Cezard T, Moore R, Zhao Y, Tam A, Wang S, Friedmann M, Birol I, Jones SJ, Cronk QC, Douglas CJ.

Mol Ecol Resour. 2011 Mar;11 Suppl 1:81-92. doi: 10.1111/j.1755-0998.2010.02960.x.

PMID:
21429165
2.

The developing xylem transcriptome and genome-wide analysis of alternative splicing in Populus trichocarpa (black cottonwood) populations.

Bao H, Li E, Mansfield SD, Cronk QC, El-Kassaby YA, Douglas CJ.

BMC Genomics. 2013 May 29;14:359. doi: 10.1186/1471-2164-14-359.

3.

The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).

Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S, Déjardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S, Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J, Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B, Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M, Jorgensen R, Joshi C, Kangasjärvi J, Karlsson J, Kelleher C, Kirkpatrick R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leplé JC, Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR, Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G, Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouzé P, Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F, Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S, Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D.

Science. 2006 Sep 15;313(5793):1596-604.

4.

Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.

Ralph SG, Chun HJ, Cooper D, Kirkpatrick R, Kolosova N, Gunter L, Tuskan GA, Douglas CJ, Holt RA, Jones SJ, Marra MA, Bohlmann J.

BMC Genomics. 2008 Jan 29;9:57. doi: 10.1186/1471-2164-9-57.

5.

Association genetics of traits controlling lignin and cellulose biosynthesis in black cottonwood (Populus trichocarpa, Salicaceae) secondary xylem.

Wegrzyn JL, Eckert AJ, Choi M, Lee JM, Stanton BJ, Sykes R, Davis MF, Tsai CJ, Neale DB.

New Phytol. 2010 Oct;188(2):515-32. doi: 10.1111/j.1469-8137.2010.03415.x. Epub 2010 Sep 10.

PMID:
20831625
6.

Transcriptome analysis for Caenorhabditis elegans based on novel expressed sequence tags.

Shin H, Hirst M, Bainbridge MN, Magrini V, Mardis E, Moerman DG, Marra MA, Baillie DL, Jones SJ.

BMC Biol. 2008 Jul 8;6:30. doi: 10.1186/1741-7007-6-30.

7.

Use of Ecotilling as an efficient SNP discovery tool to survey genetic variation in wild populations of Populus trichocarpa.

Gilchrist EJ, Haughn GW, Ying CC, Otto SP, Zhuang J, Cheung D, Hamberger B, Aboutorabi F, Kalynyak T, Johnson L, Bohlmann J, Ellis BE, Douglas CJ, Cronk QC.

Mol Ecol. 2006 Apr;15(5):1367-78.

PMID:
16626459
8.

The cinnamyl alcohol dehydrogenase gene family in Populus: phylogeny, organization, and expression.

Barakat A, Bagniewska-Zadworna A, Choi A, Plakkat U, DiLoreto DS, Yellanki P, Carlson JE.

BMC Plant Biol. 2009 Mar 6;9:26. doi: 10.1186/1471-2229-9-26.

9.

SNP discovery by transcriptome pyrosequencing.

Barbazuk WB, Schnable PS.

Methods Mol Biol. 2011;729:225-46. doi: 10.1007/978-1-61779-065-2_15.

PMID:
21365494
10.

Targeted enrichment of the black cottonwood (Populus trichocarpa) gene space using sequence capture.

Zhou L, Holliday JA.

BMC Genomics. 2012 Dec 14;13:703. doi: 10.1186/1471-2164-13-703.

11.

Poplar genomics is getting popular: the impact of the poplar genome project on tree research.

Tuskan GA, DiFazio SP, Teichmann T.

Plant Biol (Stuttg). 2004 Jan-Feb;6(1):2-4.

PMID:
15095128
12.

The genome sequence of black cottonwood (Populus trichocarpa) reveals 18 conserved cellulose synthase (CesA) genes.

Djerbi S, Lindskog M, Arvestad L, Sterky F, Teeri TT.

Planta. 2005 Jul;221(5):739-46. Epub 2005 Jun 7.

PMID:
15940463
13.

Comparative analysis of the transcriptomes of Populus trichocarpa and Arabidopsis thaliana suggests extensive evolution of gene expression regulation in angiosperms.

Quesada T, Li Z, Dervinis C, Li Y, Bocock PN, Tuskan GA, Casella G, Davis JM, Kirst M.

New Phytol. 2008;180(2):408-20. doi: 10.1111/j.1469-8137.2008.02586.x. Epub 2008 Aug 5.

PMID:
18694447
14.
15.

MAP-ping genomic organization and organ-specific expression profiles of poplar MAP kinases and MAP kinase kinases.

Nicole MC, Hamel LP, Morency MJ, Beaudoin N, Ellis BE, Séguin A.

BMC Genomics. 2006 Aug 31;7:223.

16.

Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach.

Bainbridge MN, Warren RL, Hirst M, Romanuik T, Zeng T, Go A, Delaney A, Griffith M, Hickenbotham M, Magrini V, Mardis ER, Sadar MD, Siddiqui AS, Marra MA, Jones SJ.

BMC Genomics. 2006 Sep 29;7:246.

17.

Patterns of DNA sequence variation at candidate gene loci in black poplar (Populus nigra L.) as revealed by single nucleotide polymorphisms.

Chu Y, Su X, Huang Q, Zhang X.

Genetica. 2009 Nov;137(2):141-50. doi: 10.1007/s10709-009-9371-1. Epub 2009 May 31.

PMID:
19484494
18.

A microarray-based genotyping and genetic mapping approach for highly heterozygous outcrossing species enables localization of a large fraction of the unassembled Populus trichocarpa genome sequence.

Drost DR, Novaes E, Boaventura-Novaes C, Benedict CI, Brown RS, Yin T, Tuskan GA, Kirst M.

Plant J. 2009 Jun;58(6):1054-67. doi: 10.1111/j.1365-313X.2009.03828.x. Epub 2009 Feb 10. Erratum in: Plant J. 2009 Dec;60(5):929.

PMID:
19220791
19.

Genome-wide analysis of the MADS-box gene family in Populus trichocarpa.

Leseberg CH, Li A, Kang H, Duvall M, Mao L.

Gene. 2006 Aug 15;378:84-94. Epub 2006 Jul 10.

PMID:
16831523
20.

Genome-scale transcriptome analysis of the desert poplar, Populus euphratica.

Qiu Q, Ma T, Hu Q, Liu B, Wu Y, Zhou H, Wang Q, Wang J, Liu J.

Tree Physiol. 2011 Apr;31(4):452-61. doi: 10.1093/treephys/tpr015. Epub 2011 Mar 22.

PMID:
21427158
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